Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OHM01_RS00495 Genome accession   NZ_CP107274
Coordinates   106666..107265 (-) Length   199 a.a.
NCBI ID   WP_003700890.1    Uniprot ID   B4RQ26
Organism   Neisseria gonorrhoeae strain 1145734     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101666..112265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM01_RS00480 (OHM01_00480) pilQ 103238..105433 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  OHM01_RS00485 (OHM01_00485) pilP 105452..106000 (-) 549 WP_263936410.1 pilus assembly protein PilP Machinery gene
  OHM01_RS00490 (OHM01_00490) - 106018..106665 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  OHM01_RS00495 (OHM01_00495) pilN 106666..107265 (-) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  OHM01_RS00500 (OHM01_00500) pilM 107268..108383 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  OHM01_RS00505 (OHM01_00505) - 108535..110931 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  OHM01_RS00510 (OHM01_00510) yihA 111052..111681 (-) 630 WP_263936411.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22182.59 Da        Isoelectric Point: 10.1157

>NTDB_id=643143 OHM01_RS00495 WP_003700890.1 106666..107265(-) (pilN) [Neisseria gonorrhoeae strain 1145734]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSKIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=643143 OHM01_RS00495 WP_003700890.1 106666..107265(-) (pilN) [Neisseria gonorrhoeae strain 1145734]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGAAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RQ26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

96.985

100

0.97