Detailed information NTG0064306

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HRR26_RS04945
• Genome accession: NZ_AP021895
• Coordinates: 1031138..1032130 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2018-11-3CC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1026138..1037130

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRR26_RS04915 (VEGS11_09670)	ispD	1026199..1026909 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HRR26_RS04920 (VEGS11_09680)	ispF	1026909..1027388 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HRR26_RS04925 (VEGS11_09690)	truD	1027385..1028434 (+)	1050	WP_172410876.1	tRNA pseudouridine(13) synthase TruD	-
HRR26_RS04930 (VEGS11_09700)	surE	1028415..1029176 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HRR26_RS04935 (VEGS11_09710)	pcm	1029170..1029796 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HRR26_RS04940 (VEGS11_09720)	nlpD	1029981..1031075 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HRR26_RS04945 (VEGS11_09730)	rpoS	1031138..1032130 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HRR26_RS04950 (VEGS11_09740)	ygbN	1032224..1033588 (-)	1365	WP_000104429.1	GntP family transporter	-
HRR26_RS04955 (VEGS11_09750)	ygbM	1033677..1034453 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
HRR26_RS04960 (VEGS11_09760)	ygbL	1034458..1035096 (-)	639	WP_001278994.1	aldolase	-
HRR26_RS04965 (VEGS11_09770)	otnK	1035093..1036355 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=64306 HRR26_RS04945 WP_000081550.1 1031138..1032130(+) (rpoS) [Escherichia coli strain 2018-11-3CC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=64306 HRR26_RS04945 WP_000081550.1 1031138..1032130(+) (rpoS) [Escherichia coli strain 2018-11-3CC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715