Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | IHC88_RS04400 | Genome accession | NZ_CP090498 |
| Coordinates | 866188..866448 (+) | Length | 86 a.a. |
| NCBI ID | WP_370466065.1 | Uniprot ID | - |
| Organism | Photobacterium damselae subsp. damselae strain CSP DAM2 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 861188..871448
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHC88_RS04390 (IHC88_04390) | hupB | 863476..863748 (+) | 273 | WP_005298263.1 | nucleoid-associated protein HU-beta | - |
| IHC88_RS04395 (IHC88_04395) | ppiD | 864099..865997 (+) | 1899 | WP_106339073.1 | peptidylprolyl isomerase | - |
| IHC88_RS04400 (IHC88_04400) | comEA | 866188..866448 (+) | 261 | WP_370466065.1 | ComEA family DNA-binding protein | Machinery gene |
| IHC88_RS04405 (IHC88_04405) | - | 866533..866871 (-) | 339 | WP_086957111.1 | DUF1971 domain-containing protein | - |
| IHC88_RS04410 (IHC88_04410) | rrtA | 866958..867515 (-) | 558 | WP_237033477.1 | rhombosortase | - |
| IHC88_RS04415 (IHC88_04415) | - | 867525..868142 (+) | 618 | WP_068969098.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| IHC88_RS04420 (IHC88_04420) | - | 868389..869717 (-) | 1329 | WP_237033478.1 | anti-phage deoxyguanosine triphosphatase | - |
| IHC88_RS04425 (IHC88_04425) | yfbR | 869717..870301 (-) | 585 | WP_065171103.1 | 5'-deoxynucleotidase | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9485.96 Da Isoelectric Point: 5.1351
>NTDB_id=642945 IHC88_RS04400 WP_370466065.1 866188..866448(+) (comEA) [Photobacterium damselae subsp. damselae strain CSP DAM2]
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=642945 IHC88_RS04400 WP_370466065.1 866188..866448(+) (comEA) [Photobacterium damselae subsp. damselae strain CSP DAM2]
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGAATTGGCCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGCATTGGTCCCTCTACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGAATTGGCCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGCATTGGTCCCTCTACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.118 |
98.837 |
0.535 |
| comEA | Vibrio campbellii strain DS40M4 |
53.488 |
100 |
0.535 |
| comEA | Vibrio cholerae C6706 |
57.353 |
79.07 |
0.453 |
| comEA | Vibrio cholerae strain A1552 |
57.353 |
79.07 |
0.453 |
| comEA | Acinetobacter baylyi ADP1 |
57.812 |
74.419 |
0.43 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.667 |
69.767 |
0.395 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.738 |
70.93 |
0.395 |
| comA | Synechocystis sp. PCC 6803 |
43.421 |
88.372 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.613 |
72.093 |
0.372 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50 |
72.093 |
0.36 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
49.206 |
73.256 |
0.36 |