Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NDN54_RS11350 Genome accession   NZ_CP107266
Coordinates   2143306..2144274 (-) Length   322 a.a.
NCBI ID   WP_003690389.1    Uniprot ID   B4RR95
Organism   Neisseria gonorrhoeae strain 9112     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2138306..2149274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN54_RS11325 (NDN54_11325) - 2138848..2140155 (-) 1308 WP_012504094.1 YadA-like family protein -
  NDN54_RS11330 (NDN54_11330) - 2140141..2140794 (+) 654 WP_012503717.1 IS1595 family transposase -
  NDN54_RS11335 (NDN54_11335) - 2140829..2141587 (-) 759 WP_003687045.1 ABC transporter ATP-binding protein -
  NDN54_RS11340 (NDN54_11340) - 2141671..2142297 (-) 627 WP_003690385.1 FmdE family protein -
  NDN54_RS11345 (NDN54_11345) - 2142342..2143316 (-) 975 WP_003690387.1 iron chelate uptake ABC transporter family permease subunit -
  NDN54_RS11350 (NDN54_11350) ceuB 2143306..2144274 (-) 969 WP_003690389.1 ABC transporter permease Machinery gene
  NDN54_RS11355 (NDN54_11355) - 2144293..2144484 (-) 192 WP_162098494.1 hypothetical protein -
  NDN54_RS11360 (NDN54_11360) - 2144502..2145473 (-) 972 WP_012504096.1 siderophore ABC transporter substrate-binding protein -
  NDN54_RS12160 - 2145557..2145619 (+) 63 Protein_2185 transposase -
  NDN54_RS11365 (NDN54_11365) fetA 2145779..2147941 (-) 2163 WP_041421409.1 TonB-dependent siderophore receptor FetA/FrpB -
  NDN54_RS11370 (NDN54_11370) - 2148448..2148738 (+) 291 WP_003687059.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34382.67 Da        Isoelectric Point: 10.5988

>NTDB_id=642923 NDN54_RS11350 WP_003690389.1 2143306..2144274(-) (ceuB) [Neisseria gonorrhoeae strain 9112]
MTAKPFSLNLANLLLPAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGSSMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLMGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=642923 NDN54_RS11350 WP_003690389.1 2143306..2144274(-) (ceuB) [Neisseria gonorrhoeae strain 9112]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCTCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGATGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RR95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.86

93.478

0.391