Detailed information NTG0642784

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N5938_RS30120
• Genome accession: NZ_CP107257
• Coordinates: 6351740..6352744 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2019CK-00034
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6346740..6357744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5938_RS30105 (N5938_30105)	-	6347224..6348231 (+)	1008	WP_003092265.1	TolB family protein	-
N5938_RS30110 (N5938_30110)	mutS	6348357..6350924 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
N5938_RS30115 (N5938_30115)	fdxA	6350991..6351314 (+)	324	WP_003092272.1	ferredoxin FdxA	-
N5938_RS30120 (N5938_30120)	rpoS	6351740..6352744 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
N5938_RS30125 (N5938_30125)	-	6352849..6353742 (-)	894	WP_023436003.1	peptidoglycan DD-metalloendopeptidase family protein	-
N5938_RS30130 (N5938_30130)	-	6353788..6354423 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
N5938_RS30135 (N5938_30135)	surE	6354456..6355205 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
N5938_RS30140 (N5938_30140)	truD	6355193..6356260 (-)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
N5938_RS30145 (N5938_30145)	ispF	6356257..6356730 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N5938_RS30150 (N5938_30150)	fghA	6356801..6357652 (-)	852	WP_009876912.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=642784 N5938_RS30120 WP_003113871.1 6351740..6352744(-) (rpoS) [Pseudomonas aeruginosa strain 2019CK-00034]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=642784 N5938_RS30120 WP_003113871.1 6351740..6352744(-) (rpoS) [Pseudomonas aeruginosa strain 2019CK-00034]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653