Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   N5938_RS27705 Genome accession   NZ_CP107257
Coordinates   5844454..5844783 (-) Length   109 a.a.
NCBI ID   WP_116820161.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2019CK-00034     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5839454..5849783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5938_RS27690 (N5938_27690) uvrB 5840841..5842853 (-) 2013 WP_116820160.1 excinuclease ABC subunit UvrB Machinery gene
  N5938_RS27695 (N5938_27695) - 5843041..5844237 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  N5938_RS27705 (N5938_27705) comEA/comE1 5844454..5844783 (-) 330 WP_116820161.1 ComEA family DNA-binding protein Machinery gene
  N5938_RS27710 (N5938_27710) - 5844974..5846971 (-) 1998 WP_263901703.1 polysaccharide biosynthesis protein -
  N5938_RS27715 (N5938_27715) - 5847006..5848026 (-) 1021 Protein_5485 MraY family glycosyltransferase -
  N5938_RS27720 (N5938_27720) - 5848028..5848985 (-) 958 Protein_5486 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11411.42 Da        Isoelectric Point: 8.0459

>NTDB_id=642779 N5938_RS27705 WP_116820161.1 5844454..5844783(-) (comEA/comE1) [Pseudomonas aeruginosa strain 2019CK-00034]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAAMTPATTLSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=642779 N5938_RS27705 WP_116820161.1 5844454..5844783(-) (comEA/comE1) [Pseudomonas aeruginosa strain 2019CK-00034]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAACCCGCTGGCCGCAATGACACCTGCGACGACCCTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385