Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LXM88_RS15845 Genome accession   NZ_CP090483
Coordinates   2352649..2354025 (-) Length   458 a.a.
NCBI ID   WP_262533742.1    Uniprot ID   -
Organism   Burkholderia sp. S-53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2347649..2359025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM88_RS15825 (LXM88_15785) cls 2348013..2349461 (+) 1449 WP_262533732.1 cardiolipin synthase -
  LXM88_RS15830 (LXM88_15790) - 2349524..2350003 (-) 480 WP_262533734.1 glutathione peroxidase -
  LXM88_RS15835 (LXM88_15795) - 2350140..2352071 (+) 1932 WP_262533737.1 ATP-binding cassette domain-containing protein -
  LXM88_RS15840 (LXM88_15800) - 2352236..2352502 (-) 267 WP_262533740.1 DUF2866 domain-containing protein -
  LXM88_RS15845 (LXM88_15805) radA 2352649..2354025 (-) 1377 WP_262533742.1 DNA repair protein RadA Machinery gene
  LXM88_RS15850 (LXM88_15810) alr 2354037..2355107 (-) 1071 WP_262533744.1 alanine racemase -
  LXM88_RS15855 (LXM88_15815) lplT 2355326..2356633 (+) 1308 WP_096471222.1 lysophospholipid transporter LplT -
  LXM88_RS15860 (LXM88_15820) thiD 2356692..2357501 (+) 810 WP_262533748.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LXM88_RS15865 (LXM88_15825) - 2357520..2358485 (-) 966 WP_262533751.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48925.34 Da        Isoelectric Point: 6.7606

>NTDB_id=642746 LXM88_RS15845 WP_262533742.1 2352649..2354025(-) (radA) [Burkholderia sp. S-53]
MAKQKTIYVCSECGGQSPKWQGQCPSCQAWNTLVESVPETPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGTPAAELQLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLFVFGEVGLA
GEIRPSPRGQERLREAAKLGFTAALIPKANAPKQPIEGLNVMAVERIEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=642746 LXM88_RS15845 WP_262533742.1 2352649..2354025(-) (radA) [Burkholderia sp. S-53]
GTGGCCAAACAGAAAACCATCTATGTCTGCAGCGAGTGCGGCGGGCAGTCCCCGAAGTGGCAGGGGCAGTGTCCGTCGTG
CCAAGCCTGGAACACGCTCGTCGAATCGGTCCCCGAGACGCCGTCGGCCCACCGTTTCCAGTCGCTCGCGAAGCGGGCGC
CCGTGCAGCGGCTCGTCGACATCGAAGCGGCCGATGTGCCGCGCTTCTCGACGGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTGCCCGGCGGCGTCGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACGCTGCTGTTGCAGTC
GCTCGCGGACATCGCGAGCGAACGGCGCGCGCTTTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTGGCGCTGCTCGACGGCGGTACGCCGGCGGCCGAGCTGCAACTGCTCGCCGAGATCCAGCTCGAAAAGATCCAG
GCCGCGATCGACGCGGAACGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAGGCGCTCACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACACGCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTGGTCGATACCGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
GATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCAGTCGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGTTGTTCGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCCCCGCGCGGGCAGGAGCGGCTGCGCGAGGCGGCGAAGCTCGGCTTCACGGCCGCGCTGATCCC
GAAGGCGAACGCGCCGAAACAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGAGCGGATCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus pneumoniae Rx1

47.619

100

0.48
  radA Streptococcus pneumoniae D39

47.619

100

0.48
  radA Streptococcus pneumoniae R6

47.619

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.619

100

0.48
  radA Streptococcus mitis SK321

47.93

100

0.48
  radA Streptococcus mitis NCTC 12261

47.598

100

0.476