Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   N5938_RS02000 Genome accession   NZ_CP107257
Coordinates   424887..425252 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 2019CK-00034     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419887..430252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5938_RS01985 (N5938_01985) pilK 421230..422105 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  N5938_RS01990 (N5938_01990) pilJ 422166..424214 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  N5938_RS01995 (N5938_01995) - 424299..424836 (-) 538 Protein_388 chemotaxis protein CheW -
  N5938_RS02000 (N5938_02000) pilH 424887..425252 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  N5938_RS02005 (N5938_02005) pilG 425299..425706 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  N5938_RS02010 (N5938_02010) gshB 425961..426914 (+) 954 WP_043085603.1 glutathione synthase -
  N5938_RS02015 (N5938_02015) - 427061..427954 (+) 894 WP_003084580.1 TonB family protein -
  N5938_RS02020 (N5938_02020) - 428003..428572 (+) 570 WP_003084577.1 YqgE/AlgH family protein -
  N5938_RS02025 (N5938_02025) ruvX 428572..429006 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  N5938_RS02030 (N5938_02030) pyrR 429118..429630 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=642696 N5938_RS02000 WP_003084587.1 424887..425252(-) (pilH) [Pseudomonas aeruginosa strain 2019CK-00034]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=642696 N5938_RS02000 WP_003084587.1 424887..425252(-) (pilH) [Pseudomonas aeruginosa strain 2019CK-00034]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364