Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N5938_RS01595 Genome accession   NZ_CP107257
Coordinates   325005..325730 (+) Length   241 a.a.
NCBI ID   WP_116819536.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2019CK-00034     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 320005..330730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5938_RS01565 (N5938_01565) - 320125..321003 (-) 879 WP_021263093.1 5-oxoprolinase subunit B family protein -
  N5938_RS01570 (N5938_01570) - 321005..322381 (-) 1377 WP_116819537.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  N5938_RS01575 (N5938_01575) - 322392..322640 (-) 249 WP_003111233.1 acetyl-CoA carboxylase -
  N5938_RS01580 (N5938_01580) - 322717..323475 (-) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  N5938_RS01585 (N5938_01585) - 323593..324519 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  N5938_RS01590 (N5938_01590) - 324573..324866 (+) 294 WP_003084806.1 hypothetical protein -
  N5938_RS01595 (N5938_01595) comF 325005..325730 (+) 726 WP_116819536.1 ComF family protein Machinery gene
  N5938_RS01600 (N5938_01600) - 325772..326098 (+) 327 WP_033989228.1 YfiM family lipoprotein -
  N5938_RS01605 (N5938_01605) - 326166..326924 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  N5938_RS01610 (N5938_01610) - 326986..327960 (+) 975 WP_003129062.1 serine/threonine protein kinase -
  N5938_RS01615 (N5938_01615) rarD 328163..329059 (+) 897 WP_003103301.1 EamA family transporter RarD -
  N5938_RS01620 (N5938_01620) - 329749..330264 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27042.54 Da        Isoelectric Point: 10.3916

>NTDB_id=642693 N5938_RS01595 WP_116819536.1 325005..325730(+) (comF) [Pseudomonas aeruginosa strain 2019CK-00034]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCHACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
YSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=642693 N5938_RS01595 WP_116819536.1 325005..325730(+) (comF) [Pseudomonas aeruginosa strain 2019CK-00034]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCACGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
TACAGCCTGCGGCGAGTGCTGGATACGCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361