Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   LXM91_RS01770 Genome accession   NZ_CP090477
Coordinates   330576..330974 (-) Length   132 a.a.
NCBI ID   WP_039252825.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain W0101     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 325576..335974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM91_RS01745 (LXM91_01745) - 325748..326950 (+) 1203 WP_039252831.1 GTP-binding protein -
  LXM91_RS01750 (LXM91_01750) - 327015..328151 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  LXM91_RS01755 (LXM91_01755) - 328166..328600 (+) 435 WP_012116767.1 RDD family protein -
  LXM91_RS01760 (LXM91_01760) - 328672..328995 (+) 324 WP_007409357.1 YckD family protein -
  LXM91_RS01765 (LXM91_01765) - 329099..330535 (+) 1437 WP_015416781.1 family 1 glycosylhydrolase -
  LXM91_RS01770 (LXM91_01770) nin/comJ 330576..330974 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  LXM91_RS01775 (LXM91_01775) nucA/comI 330995..331432 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LXM91_RS01780 (LXM91_01780) hxlB 331790..332347 (-) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  LXM91_RS01785 (LXM91_01785) hxlA 332344..332979 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  LXM91_RS01790 (LXM91_01790) - 333211..333573 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14993.97 Da        Isoelectric Point: 4.9712

>NTDB_id=642670 LXM91_RS01770 WP_039252825.1 330576..330974(-) (nin/comJ) [Bacillus amyloliquefaciens strain W0101]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=642670 LXM91_RS01770 WP_039252825.1 330576..330974(-) (nin/comJ) [Bacillus amyloliquefaciens strain W0101]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758