Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVQ67_RS09880 Genome accession   NZ_CP090476
Coordinates   2005678..2007051 (+) Length   457 a.a.
NCBI ID   WP_003670547.1    Uniprot ID   A0AAW4X7I2
Organism   Limosilactobacillus reuteri strain M2021619     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2000678..2012051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVQ67_RS09850 (LVQ67_09850) - 2000953..2001702 (+) 750 WP_003670553.1 amino acid ABC transporter ATP-binding protein -
  LVQ67_RS09855 (LVQ67_09855) - 2001718..2002509 (+) 792 WP_003670552.1 transporter substrate-binding domain-containing protein -
  LVQ67_RS09860 (LVQ67_09860) - 2002617..2003957 (-) 1341 WP_003670551.1 aminopeptidase C -
  LVQ67_RS09865 (LVQ67_09865) rpiA 2003986..2004669 (-) 684 WP_003670550.1 ribose-5-phosphate isomerase RpiA -
  LVQ67_RS09870 (LVQ67_09870) - 2004681..2004977 (-) 297 WP_003666282.1 GNAT family N-acetyltransferase -
  LVQ67_RS09875 (LVQ67_09875) - 2005116..2005652 (+) 537 WP_003670548.1 hypothetical protein -
  LVQ67_RS09880 (LVQ67_09880) radA 2005678..2007051 (+) 1374 WP_003670547.1 DNA repair protein RadA Machinery gene
  LVQ67_RS09885 (LVQ67_09885) - 2007069..2008226 (+) 1158 WP_003670546.1 PIN/TRAM domain-containing protein -
  LVQ67_RS09890 (LVQ67_09890) cysS 2008607..2010019 (+) 1413 WP_035159778.1 cysteine--tRNA ligase -
  LVQ67_RS09895 (LVQ67_09895) - 2010031..2010444 (+) 414 WP_003670544.1 Mini-ribonuclease 3 -
  LVQ67_RS09900 (LVQ67_09900) rlmB 2010434..2011183 (+) 750 WP_003667343.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LVQ67_RS09905 (LVQ67_09905) rpmG 2011249..2011398 (+) 150 WP_003666293.1 50S ribosomal protein L33 -
  LVQ67_RS09910 (LVQ67_09910) secE 2011410..2011586 (+) 177 WP_003666294.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49933.24 Da        Isoelectric Point: 8.4221

>NTDB_id=642661 LVQ67_RS09880 WP_003670547.1 2005678..2007051(+) (radA) [Limosilactobacillus reuteri strain M2021619]
MAKIRTQYVCQNCGYNSPRYLGRCPNCGEWNTLVEEQVEASSAPTKKATTTLTGLVAKPQKINEIDSTETPRVKTKLNEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSDEHHRVLYVSGEESGTQIKMRAERLKVAGDDFYVYPETNMDSIR
DTIRDLKPEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITIFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLTEVKNPSEIFLEERLHDATGSAVVVSLEGTRPILVEIQALVTPTVY
GNAQRTATGLSRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTKPTDAFVGEVGLT
GEIRRVNRIEQRVAEAEKLGFKRIFIPKNNLKGWKPSTNIQVVGVSTLKEALYLALG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=642661 LVQ67_RS09880 WP_003670547.1 2005678..2007051(+) (radA) [Limosilactobacillus reuteri strain M2021619]
ATGGCAAAAATTCGAACACAATATGTTTGCCAAAACTGTGGTTATAACTCACCACGCTATTTAGGCCGGTGTCCAAATTG
TGGTGAGTGGAATACTTTAGTAGAAGAACAGGTAGAAGCTAGTTCTGCACCAACCAAAAAAGCAACCACCACCTTAACCG
GCTTAGTTGCCAAACCACAGAAAATTAATGAGATTGATAGTACAGAAACTCCCCGTGTTAAAACAAAATTGAACGAGTTA
AATCGCGTTTTAGGTGGAGGAATCGTTCCCGGATCACTAATTCTAATTGGAGGAGATCCGGGAATCGGAAAATCGACTCT
CCTTTTACAAGTTTCCGGACAATTAAGTGATGAGCATCACCGGGTTTTATATGTGTCTGGAGAAGAAAGTGGGACACAAA
TTAAAATGCGGGCGGAACGATTAAAAGTTGCTGGGGATGACTTTTATGTATATCCAGAAACGAATATGGATAGTATTCGG
GATACTATTCGTGACCTCAAGCCAGAGTATGTCGTGATTGACTCGGTACAAACGATGCAGGCGACTGATGTAAGTTCAGC
AATTGGTAGTGTATCGCAAATTCGTGAAGTTACTGCCCAGTTAATGCAAATTGCTAAAAGTAATAACATTACGATTTTTG
TCGTTGGACATGTGACAAAGGGCGGTGCAATCGCTGGTCCAAAGATCTTGGAGCACATGGTTGATACAGTCTTGTATTTT
GAAGGAGACCTGCACCATACATATCGTATTTTGCGATCAGTGAAAAATCGATTTGGTTCAACTAACGAGCTTGGTATTTT
TGAAATGCATACAAATGGGCTGACGGAAGTAAAAAATCCATCAGAAATCTTTTTAGAGGAACGATTACATGATGCAACCG
GTTCAGCGGTGGTTGTTTCATTAGAAGGAACACGACCAATTTTAGTTGAAATTCAAGCGCTGGTAACACCGACCGTTTAT
GGGAATGCACAGCGAACTGCTACCGGTTTGAGCCGAAACCGAGTATCATTGATAATGGCGGTATTAGAGAAACGTGCTAA
CCTAATGCTTCAAAATCAAGATGCTTACTTAAAAGCAGCTGGGGGCGTTAAGTTAGATGAGCCAGCAATTGATTTGGCAA
TTGCAGTAAGTATTGCCTCCAGTTATCGGGATAAAGGAACCAAGCCCACCGATGCATTTGTCGGTGAGGTAGGTTTGACT
GGGGAAATTCGCCGGGTAAACCGAATTGAACAGCGGGTTGCTGAAGCAGAAAAACTTGGCTTTAAGCGAATCTTTATTCC
CAAAAATAATTTAAAGGGTTGGAAACCGTCAACTAATATTCAAGTAGTCGGTGTCTCAACGCTTAAAGAGGCGTTATATT
TAGCGCTGGGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

66.372

98.906

0.656
  radA Streptococcus mitis NCTC 12261

66.372

98.906

0.656
  radA Streptococcus pneumoniae Rx1

66.15

98.906

0.654
  radA Streptococcus pneumoniae D39

66.15

98.906

0.654
  radA Streptococcus pneumoniae R6

66.15

98.906

0.654
  radA Streptococcus pneumoniae TIGR4

66.15

98.906

0.654
  radA Bacillus subtilis subsp. subtilis str. 168

62.801

100

0.628