Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   HRR23_RS19805 Genome accession   NZ_AP021894
Coordinates   4063612..4064850 (-) Length   412 a.a.
NCBI ID   WP_097302381.1    Uniprot ID   -
Organism   Escherichia coli strain 2018-10-1CC     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4058612..4069850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRR23_RS19795 (VEGS09_38810) - 4058946..4062455 (+) 3510 WP_113444695.1 hypothetical protein -
  HRR23_RS19800 (VEGS09_38820) - 4062574..4063563 (+) 990 WP_000028052.1 hypothetical protein -
  HRR23_RS19805 (VEGS09_38830) kpsS 4063612..4064850 (-) 1239 WP_097302381.1 capsular biosynthesis protein Regulator
  HRR23_RS19810 (VEGS09_38840) - 4064885..4066912 (-) 2028 WP_113444694.1 capsular polysaccharide biosynthesis protein -
  HRR23_RS19815 (VEGS09_38850) kdsB 4066909..4067649 (-) 741 WP_097302386.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HRR23_RS19820 (VEGS09_38860) - 4067659..4069335 (-) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 49034.72 Da        Isoelectric Point: 10.2331

>NTDB_id=64266 HRR23_RS19805 WP_097302381.1 4063612..4064850(-) (kpsS) [Escherichia coli strain 2018-10-1CC]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGDRVRKQIKVK
KIITTNDIKTSS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=64266 HRR23_RS19805 WP_097302381.1 4063612..4064850(-) (kpsS) [Escherichia coli strain 2018-10-1CC]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAGTATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGATAGAGTAAGAAAACAAATAAAAGTAAAA
AAAATTATAACTACGAACGATATAAAAACCAGCTCTTAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.898

94.903

0.379

Multiple sequence alignment