Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   N5898_RS02530 Genome accession   NZ_CP107256
Coordinates   488788..489654 (-) Length   288 a.a.
NCBI ID   WP_002856218.1    Uniprot ID   -
Organism   Campylobacter jejuni strain PNUSAC004956     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483788..494654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5898_RS02510 (N5898_02510) metF 485641..486489 (+) 849 WP_002868862.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  N5898_RS02515 (N5898_02515) - 486511..486702 (-) 192 WP_002868861.1 hypothetical protein -
  N5898_RS02520 (N5898_02520) atpB 486699..487379 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  N5898_RS02525 (N5898_02525) radA/sms 487448..488788 (-) 1341 WP_002856363.1 DNA repair protein RadA Machinery gene
  N5898_RS02530 (N5898_02530) pilA 488788..489654 (-) 867 WP_002856218.1 signal recognition particle-docking protein FtsY Machinery gene
  N5898_RS02535 (N5898_02535) - 489654..490211 (-) 558 WP_002867374.1 TlpA family protein disulfide reductase -
  N5898_RS02540 (N5898_02540) - 490294..490920 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  N5898_RS02545 (N5898_02545) rny 490841..492394 (+) 1554 WP_002867373.1 ribonuclease Y -
  N5898_RS02550 (N5898_02550) - 492403..492960 (+) 558 WP_002868860.1 DedA family protein -
  N5898_RS02555 (N5898_02555) - 492960..494219 (+) 1260 WP_002867371.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32049.03 Da        Isoelectric Point: 5.5179

>NTDB_id=642655 N5898_RS02530 WP_002856218.1 488788..489654(-) (pilA) [Campylobacter jejuni strain PNUSAC004956]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNANAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=642655 N5898_RS02530 WP_002856218.1 488788..489654(-) (pilA) [Campylobacter jejuni strain PNUSAC004956]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAATGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437