Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5898_RS01870 Genome accession   NZ_CP107256
Coordinates   358412..358960 (+) Length   182 a.a.
NCBI ID   WP_002854048.1    Uniprot ID   -
Organism   Campylobacter jejuni strain PNUSAC004956     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 353412..363960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5898_RS01835 (N5898_01835) - 353600..354025 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  N5898_RS01840 (N5898_01840) - 354089..354709 (+) 621 WP_002869051.1 NAD(P)H-dependent oxidoreductase -
  N5898_RS01845 (N5898_01845) - 354709..355316 (+) 608 Protein_352 NAD(P)H-dependent oxidoreductase -
  N5898_RS01850 (N5898_01850) pgsA 355441..355977 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N5898_RS01855 (N5898_01855) rseP 355974..357080 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  N5898_RS01860 (N5898_01860) - 357073..357939 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  N5898_RS01865 (N5898_01865) rpsF 358026..358403 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  N5898_RS01870 (N5898_01870) ssb 358412..358960 (+) 549 WP_002854048.1 single-stranded DNA-binding protein Machinery gene
  N5898_RS01875 (N5898_01875) rpsR 358971..359231 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  N5898_RS01880 (N5898_01880) lon 359291..361666 (-) 2376 WP_263908138.1 endopeptidase La -
  N5898_RS01885 (N5898_01885) - 361683..362330 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  N5898_RS01890 (N5898_01890) fliW 362491..362880 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  N5898_RS01895 (N5898_01895) proC 362880..363611 (+) 732 WP_002869050.1 pyrroline-5-carboxylate reductase Machinery gene
  N5898_RS01900 (N5898_01900) ctsT 363608..363910 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=642646 N5898_RS01870 WP_002854048.1 358412..358960(+) (ssb) [Campylobacter jejuni strain PNUSAC004956]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=642646 N5898_RS01870 WP_002854048.1 358412..358960(+) (ssb) [Campylobacter jejuni strain PNUSAC004956]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGTGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39