Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   LUR16_RS00150 Genome accession   NZ_CP090475
Coordinates   33979..35604 (-) Length   541 a.a.
NCBI ID   WP_076689887.1    Uniprot ID   A0A1B1UY96
Organism   Staphylococcus haemolyticus strain BC5211     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28979..40604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUR16_RS00125 - 29633..31930 (+) 2298 WP_076689895.1 CDP-glycerol glycerophosphotransferase family protein -
  LUR16_RS00130 - 32006..32227 (-) 222 WP_076689893.1 hypothetical protein -
  LUR16_RS00135 - 32242..32745 (-) 504 WP_076689891.1 DUF1643 domain-containing protein -
  LUR16_RS00140 - 32760..33074 (-) 315 WP_076689890.1 DUF960 family protein -
  LUR16_RS00145 - 33161..33511 (-) 351 WP_076689888.1 SAUGI family uracil-DNA glycosylase inhibitor -
  LUR16_RS00150 ccrB 33979..35604 (-) 1626 WP_076689887.1 cassette chromosome recombinase CcrB Machinery gene
  LUR16_RS00155 ccrA 35638..36975 (-) 1338 WP_076689885.1 cassette chromosome recombinase CcrA Machinery gene
  LUR16_RS00160 - 37153..37410 (-) 258 WP_058332293.1 hypothetical protein -
  LUR16_RS00165 cch1 37473..39263 (-) 1791 WP_076689884.1 cassette chromosome replicative helicase -
  LUR16_RS00170 ssb 39263..39556 (-) 294 WP_076689881.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62464.37 Da        Isoelectric Point: 9.7263

>NTDB_id=642613 LUR16_RS00150 WP_076689887.1 33979..35604(-) (ccrB) [Staphylococcus haemolyticus strain BC5211]
MDKMKKKLVGGYIRVSTERQVEGYSIEGQITQIEQYCQFNGYELVDIYADRGISGKSMNRPELQRMLNDAKNGKLDCVMV
YKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLMLQILASFSEFERNTILENIYTGQRQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDKPVITEGKHTPIISQDLWDKVQARKKQVSKKPQVHGKGTNLLTGIIVCEKCGAAYAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQENQVDVAALNHDIAYKQQQFDE
INTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLKA
LYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLNTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=642613 LUR16_RS00150 WP_076689887.1 33979..35604(-) (ccrB) [Staphylococcus haemolyticus strain BC5211]
ATGGATAAAATGAAGAAAAAGCTTGTAGGAGGCTACATTCGCGTGTCCACAGAGAGACAAGTAGAGGGTTATAGTATAGA
GGGACAAATTACACAAATAGAACAATATTGCCAATTTAACGGCTATGAACTCGTTGATATATATGCAGATCGGGGTATAT
CAGGAAAATCTATGAACCGTCCTGAATTACAGCGCATGTTAAATGATGCTAAAAATGGAAAATTAGACTGTGTTATGGTT
TATAAAACAAATCGTTTGGCACGTAATACTTCCGATTTACTTACAATCGTCGAAGAACTTCATCGCCAAAATGTTGAATT
TTTTAGCTTATCTGAACGTATGGAAGTCAAAAATTCAACAGGCAAGTTAATGCTCCAGATACTTGCAAGTTTTTCCGAAT
TTGAAAGAAATACAATTTTAGAGAACATTTACACCGGACAACGTCAAAGAGCTTTAGAGGGCTATTATCAAGGCAATCTT
CCATTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCTAACATCGTTAAATATAT
CTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCATAAAGGTTATGTCACTAAGAAAG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCAAAATAC
AAAGATTGGAATGATAAACGACGTAAAGGATTAAACGATAAGCCAGTAATCACTGAAGGTAAACACACGCCTATTATTAG
TCAAGATTTATGGGATAAAGTGCAAGCACGTAAGAAGCAAGTAAGCAAAAAGCCACAGGTACATGGTAAAGGGACAAATC
TGTTAACTGGAATAATTGTCTGCGAAAAATGTGGTGCAGCATATGCAGCTTCAAATACAACCAACACACTCAAAGACGGT
ACTAAAAAACGCATTCGGTATTATTCATGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGTTAG
AGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTCGAAATAGTCAAAAGTGATAAAGTTATCAAACAAGTTGTCG
AACGTGTTAATCAAGAAAATCAAGTCGATGTAGCTGCGCTCAATCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAGCTCAAGCACCAACAAAATCAAGAGAAACCATCTT
ATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAAGCT
TTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGACGAGAATCATAAAAAACAATTCTATGTCACTCTCAAGCT
CAATAATGAAATTATTAAACAACTTTTTAATAATAACAATCTAGACGAAGTGCTCCTCAACACTTCGTCTTTGTTTTTGC
CTCAAACACTCTACTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(179-279)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(294-359)

Resolvase, N terminal domain (Resolvase)

(11-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1UY96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

79.889

100

0.8