Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HRR23_RS16935 Genome accession   NZ_AP021894
Coordinates   3463146..3463751 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 2018-10-1CC     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3458146..3468751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRR23_RS16915 (VEGS09_33180) aes 3458183..3459142 (+) 960 WP_000801813.1 acetyl esterase -
  HRR23_RS16920 (VEGS09_33190) hemH 3459139..3460101 (-) 963 WP_001250103.1 ferrochelatase -
  HRR23_RS16925 (VEGS09_33200) adk 3460337..3460981 (-) 645 WP_001220233.1 adenylate kinase -
  HRR23_RS16930 (VEGS09_33210) htpG 3461162..3463036 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HRR23_RS16935 (VEGS09_33220) recR 3463146..3463751 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HRR23_RS16940 (VEGS09_33230) ybaB 3463751..3464080 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HRR23_RS16945 (VEGS09_33240) dnaX 3464133..3466064 (-) 1932 WP_000122020.1 DNA polymerase III subunit gamma/tau -
  HRR23_RS16950 (VEGS09_33250) apt 3466193..3466744 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HRR23_RS16955 (VEGS09_33260) ybaN 3466897..3467274 (-) 378 WP_001188905.1 DUF454 family protein -
  HRR23_RS16960 (VEGS09_33270) priC 3467344..3467871 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  HRR23_RS16965 (VEGS09_33280) rsmS 3467885..3468046 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=64257 HRR23_RS16935 WP_001195025.1 3463146..3463751(-) (recR) [Escherichia coli strain 2018-10-1CC]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=64257 HRR23_RS16935 WP_001195025.1 3463146..3463751(-) (recR) [Escherichia coli strain 2018-10-1CC]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment