Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LZ684_RS14490 Genome accession   NZ_CP090456
Coordinates   2989552..2990181 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain B379     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2984552..2995181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ684_RS14475 (LZ684_14475) helD 2984794..2986848 (-) 2055 WP_234679371.1 DNA helicase IV -
  LZ684_RS14480 (LZ684_14480) yccF 2986971..2987417 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LZ684_RS14485 (LZ684_14485) yccS 2987427..2989589 (+) 2163 WP_001619291.1 YccS family putative transporter -
  LZ684_RS14490 (LZ684_14490) sxy/tfoX 2989552..2990181 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LZ684_RS14495 (LZ684_14495) sulA 2990400..2990909 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LZ684_RS14500 (LZ684_14500) ompA 2991266..2992306 (+) 1041 WP_001619288.1 porin OmpA -
  LZ684_RS14505 (LZ684_14505) matP 2992382..2992834 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LZ684_RS14510 (LZ684_14510) ycbZ 2993020..2994780 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=642555 LZ684_RS14490 WP_000839153.1 2989552..2990181(-) (sxy/tfoX) [Escherichia coli strain B379]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=642555 LZ684_RS14490 WP_000839153.1 2989552..2990181(-) (sxy/tfoX) [Escherichia coli strain B379]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1