Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LZQ00_RS15495 Genome accession   NZ_CP090446
Coordinates   3601611..3602996 (-) Length   461 a.a.
NCBI ID   WP_234510171.1    Uniprot ID   -
Organism   Sphingobacterium sp. SRCM116780     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3596611..3607996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZQ00_RS15480 (LZQ00_15480) - 3597065..3598207 (-) 1143 WP_234510168.1 methionine aminotransferase -
  LZQ00_RS15485 (LZQ00_15485) - 3598224..3600677 (-) 2454 WP_234510169.1 DUF5686 and carboxypeptidase regulatory-like domain-containing protein -
  LZQ00_RS15490 (LZQ00_15490) - 3600878..3601558 (+) 681 WP_234510170.1 peroxiredoxin family protein -
  LZQ00_RS15495 (LZQ00_15495) radA 3601611..3602996 (-) 1386 WP_234510171.1 DNA repair protein RadA Machinery gene
  LZQ00_RS15500 (LZQ00_15500) - 3603093..3603593 (+) 501 WP_234510172.1 RNA polymerase sigma factor -
  LZQ00_RS15505 (LZQ00_15505) - 3603593..3604204 (+) 612 WP_234510173.1 hypothetical protein -
  LZQ00_RS15510 (LZQ00_15510) - 3604242..3604523 (+) 282 WP_234510174.1 DUF1294 domain-containing protein -
  LZQ00_RS15515 (LZQ00_15515) - 3604520..3605683 (-) 1164 WP_234510175.1 dipeptidase -
  LZQ00_RS15520 (LZQ00_15520) - 3605689..3607458 (-) 1770 WP_234510176.1 serine hydrolase domain-containing protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50272.67 Da        Isoelectric Point: 7.0187

>NTDB_id=642509 LZQ00_RS15495 WP_234510171.1 3601611..3602996(-) (radA) [Sphingobacterium sp. SRCM116780]
MAKTKSAYFCQSCGFESAKWLGQCPSCKQWNSFVEEVIEKSSSKVPEWRSTAATSSPKRANKAAVIHEIVYQDESRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPKVKTLYISGEESEQQIKMRAERLSQSSNANCYILTETSTQ
NIFKQIEAVEPNVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVLIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDAPVSGVSIAAMLEGARPMMIEVQALVSN
SAFGTPQRTSTGFDTKRLSMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIVALISSQQDIPVKTSITFAGEV
GLSGEIRAVNRIEQRIAEAEKLGFDGIFISKFNTKGLDAKKYNIAIRPVATLEDVFRALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=642509 LZQ00_RS15495 WP_234510171.1 3601611..3602996(-) (radA) [Sphingobacterium sp. SRCM116780]
ATGGCAAAGACAAAATCAGCATATTTCTGTCAAAGTTGCGGCTTCGAATCTGCGAAATGGTTAGGGCAATGCCCTTCTTG
TAAACAATGGAATTCTTTTGTAGAAGAAGTCATTGAGAAGTCAAGTTCAAAAGTTCCCGAATGGCGGAGTACAGCAGCAA
CTTCTTCACCTAAGCGCGCAAATAAAGCTGCGGTTATTCACGAAATCGTGTACCAAGATGAATCACGGATATTAACCCCA
GATCAAGAATTTAATCGTGTATTAGGAGGAGGGATTGTTCCAGGTTCATTGGTGTTAATAGGAGGTGAACCAGGAATAGG
AAAATCGACACTGATGTTACAATTGGCATTGTCGATTCCAAAGGTGAAAACCTTGTATATCTCTGGAGAGGAAAGCGAAC
AGCAGATTAAGATGCGAGCGGAAAGACTCTCGCAATCATCCAATGCGAACTGTTATATCTTAACAGAAACGTCTACCCAA
AATATTTTTAAGCAAATAGAAGCAGTAGAGCCTAATGTTATTGTTATTGATTCGATACAAACGTTGCATTCTTCTCAAAT
AGAATCGGCACCAGGCTCGGTATCTCAAGTGCGAGAATGTACAGCAGAGCTGTTGCGGTTCGCAAAGGAAACAAGTACAC
CCGTATTGATTGTTGGTCATATTACCAAAGATGGTTCTATCGCAGGGCCCAAAGTATTGGAGCATATGGTGGATACGGTT
TTACAGTTTGAAGGAGATCGACATCATGTATACCGTATCTTACGGGCGGTCAAAAATCGCTTTGGCTCAGCTTCAGAACT
TGGGATCTATGAAATGCAAGGTTCAGGGCTGAGGGAAGTTTCTAACCCATCTGAAATCATGATTTCACAACGGGATGCTC
CTGTAAGCGGTGTGTCGATTGCAGCGATGTTAGAAGGTGCACGTCCCATGATGATTGAAGTTCAAGCCTTGGTCAGTAAT
TCCGCTTTTGGTACCCCACAACGTACCTCTACGGGGTTTGATACCAAAAGATTGAGTATGTTACTGGCAGTCTTAGAGAA
ACGCTTTGGCTTTCGATTAAGTGCACAAGATGTATTTTTAAATATTGCAGGAGGGTTGCGCGTAGAGGATCCCGCTATTG
ATTTGGCGGTTATAGTCGCTCTTATTTCCTCTCAACAAGACATTCCTGTCAAAACGAGTATTACATTTGCTGGTGAAGTA
GGTCTTTCAGGAGAGATTCGTGCTGTAAACCGAATTGAACAACGTATTGCTGAAGCTGAAAAATTAGGCTTTGATGGCAT
CTTTATTTCCAAATTTAATACAAAGGGATTAGATGCAAAGAAATATAATATTGCTATTCGTCCAGTAGCAACGCTTGAAG
ATGTCTTTCGAGCTTTATTTGGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.132

100

0.534
  radA Streptococcus mitis NCTC 12261

50.976

100

0.51
  radA Streptococcus mitis SK321

50.759

100

0.508
  radA Streptococcus pneumoniae TIGR4

50.108

100

0.501
  radA Streptococcus pneumoniae D39

50.108

100

0.501
  radA Streptococcus pneumoniae Rx1

50.108

100

0.501
  radA Streptococcus pneumoniae R6

50.108

100

0.501