Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LZ683_RS22805 Genome accession   NZ_CP090445
Coordinates   4878816..4879220 (-) Length   134 a.a.
NCBI ID   WP_003071158.1    Uniprot ID   A0A5S4T294
Organism   Comamonas testosteroni strain X13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4873816..4884220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ683_RS22790 (LZ683_22750) - 4875648..4877891 (-) 2244 WP_275053426.1 methyl-accepting chemotaxis protein -
  LZ683_RS22795 (LZ683_22755) - 4877911..4878438 (-) 528 WP_182284492.1 chemotaxis protein CheW -
  LZ683_RS22800 (LZ683_22760) - 4878454..4878816 (-) 363 WP_182284493.1 response regulator -
  LZ683_RS22805 (LZ683_22765) pilG 4878816..4879220 (-) 405 WP_003071158.1 response regulator Regulator
  LZ683_RS22810 (LZ683_22770) - 4879271..4879423 (-) 153 WP_034399566.1 rubredoxin -
  LZ683_RS22815 (LZ683_22775) - 4879539..4880507 (+) 969 WP_182284494.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LZ683_RS22820 (LZ683_22780) hemL 4880491..4881795 (+) 1305 WP_275053427.1 glutamate-1-semialdehyde 2,1-aminomutase -
  LZ683_RS22825 (LZ683_22785) - 4881946..4883721 (+) 1776 WP_275053428.1 alkaline phosphatase D family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14667.90 Da        Isoelectric Point: 6.9230

>NTDB_id=642497 LZ683_RS22805 WP_003071158.1 4878816..4879220(-) (pilG) [Comamonas testosteroni strain X13]
MTASGAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
NTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVQQFALQAADVGAA

Nucleotide


Download         Length: 405 bp        

>NTDB_id=642497 LZ683_RS22805 WP_003071158.1 4878816..4879220(-) (pilG) [Comamonas testosteroni strain X13]
GTGACAGCATCTGGTGCGCCTTTGCGCGTTCTGGTCGTGGATGACAGCAACACCATCCGCCGCAGCGCTGAAATTTTCCT
CAAGCAAGGTGGTCACGAAGTTCTTCTGGCCGATGATGGCTTCGATGCCCTGTCCAAGGTCAATGACTACCAGCCCCAGC
TCATCTTCTGCGACATTCTGATGCCCAAGCTCGATGGCTATCAGACCTGCGCCATCATCAAGCGCAATGCTCGCTTTGCC
AATACGCCCGTCGTGATGCTGTCATCCAAGGACGGTGTATTCGACAAGGCTCGAGGTCGCATGGTGGGCTGCCAAGACTA
TCTGACCAAACCATTTACCAAAGATCAATTGCTGCAAGCCGTACAACAGTTCGCGCTGCAAGCTGCAGATGTGGGAGCTG
CATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4T294

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.621

86.567

0.507