Detailed information NTG0642494

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGY63_RS07465
• Genome accession: NZ_CP107230
• Coordinates: 1524779..1525771 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain REF2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1519779..1530771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGY63_RS07445 (OGY63_07430)	ygbM	1520417..1521193 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGY63_RS07450 (OGY63_07435)	ygbN	1521282..1522646 (+)	1365	WP_000104433.1	GntP family transporter	-
OGY63_RS07455 (OGY63_07440)	-	1522789..1523832 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGY63_RS07460 (OGY63_07445)	-	1524057..1524608 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGY63_RS07465 (OGY63_07450)	rpoS	1524779..1525771 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGY63_RS07470 (OGY63_07455)	nlpD	1525834..1526928 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGY63_RS07475 (OGY63_07460)	pcm	1527113..1527739 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGY63_RS07480 (OGY63_07465)	surE	1527733..1528494 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGY63_RS07485 (OGY63_07470)	truD	1528475..1529524 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGY63_RS07490 (OGY63_07475)	ispF	1529521..1530000 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGY63_RS07495 (OGY63_07480)	ispD	1530000..1530710 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=642494 OGY63_RS07465 WP_000081550.1 1524779..1525771(-) (rpoS) [Escherichia coli strain REF2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=642494 OGY63_RS07465 WP_000081550.1 1524779..1525771(-) (rpoS) [Escherichia coli strain REF2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715