Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   LY387_RS24860 Genome accession   NZ_CP090439
Coordinates   1886093..1887166 (-) Length   357 a.a.
NCBI ID   WP_234497849.1    Uniprot ID   -
Organism   Vibrio maritimus strain BH16     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1881093..1892166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS24845 - 1881844..1882005 (+) 162 WP_234496816.1 hypothetical protein -
  LY387_RS24850 - 1882166..1883425 (+) 1260 WP_234496817.1 hydroxymethylglutaryl-CoA reductase -
  LY387_RS24855 luxQ 1883500..1886073 (-) 2574 WP_267967707.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  LY387_RS24860 luxP 1886093..1887166 (-) 1074 WP_234497849.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  LY387_RS24865 - 1887266..1887559 (-) 294 WP_234496819.1 GIY-YIG nuclease family protein -
  LY387_RS24870 - 1887616..1888281 (-) 666 WP_234496820.1 YceH family protein -
  LY387_RS24875 - 1888327..1888539 (-) 213 WP_234496821.1 hypothetical protein -
  LY387_RS24880 - 1888730..1889047 (+) 318 WP_006072802.1 DUF496 family protein -
  LY387_RS24885 - 1889338..1889586 (+) 249 WP_042471521.1 YgjV family protein -
  LY387_RS24890 - 1889913..1890266 (+) 354 WP_234496822.1 DUF1428 domain-containing protein -
  LY387_RS24895 - 1890291..1890866 (-) 576 WP_234497850.1 SOS response-associated peptidase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 40351.39 Da        Isoelectric Point: 4.9537

>NTDB_id=642463 LY387_RS24860 WP_234497849.1 1886093..1887166(-) (luxP) [Vibrio maritimus strain BH16]
MLLGTPVLTSHANTFLSDYWNYQHYLEAHPEQKALTDELQLAVSKGPMPLSVKQRKPITISVVYPGQQVSDYWVRNIKAF
ETRLEELGVEYELNQVFTRPNDDFRQQSVSLMEAVKNKSGYLIFTLDTSRHRKFIEHVLHATDTKLILQNITTPLKSWSE
NPPFMYVGFDHVKGSLLLADYFKERFNGDKADYSVLYFSEGYVSDARGGTFIQEMDKLNGFSLATSYYTKASRDSGREAA
LNTLKQHPNVNFIYACSTDVALGAADALNELDRKDVVVNGWGGGSAELEAIQNGELDVTVMRMNDDTGVAMAEAIKWDLE
DKEVPLVYSGTFELVTSADSDEKIEALKKRAFRYSDR

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=642463 LY387_RS24860 WP_234497849.1 1886093..1887166(-) (luxP) [Vibrio maritimus strain BH16]
ATGTTGCTGGGAACGCCTGTACTAACAAGCCATGCAAATACTTTCCTGTCTGATTATTGGAACTATCAACATTATTTAGA
AGCTCATCCTGAGCAAAAGGCCTTAACTGACGAGCTGCAGTTAGCTGTGTCTAAAGGTCCTATGCCGTTATCTGTAAAAC
AACGTAAACCAATCACTATTTCAGTGGTTTATCCCGGTCAACAAGTGTCTGATTATTGGGTTCGAAACATAAAAGCATTT
GAAACCAGATTAGAAGAACTGGGCGTGGAATATGAGCTGAACCAAGTTTTCACAAGACCCAATGATGATTTTAGACAGCA
AAGTGTGTCATTGATGGAAGCGGTCAAAAACAAGTCCGGTTATTTGATCTTTACGCTTGATACCTCTCGGCACCGTAAAT
TCATCGAACACGTTCTGCATGCGACAGATACTAAGCTCATACTGCAAAATATCACCACGCCTTTAAAGAGTTGGTCAGAG
AATCCTCCGTTCATGTATGTTGGATTTGACCACGTGAAAGGCAGTCTACTGCTCGCTGATTACTTCAAGGAGCGTTTTAA
TGGCGATAAAGCAGATTACTCAGTGCTGTATTTTTCAGAAGGATACGTGAGTGATGCTCGAGGGGGGACGTTTATTCAAG
AGATGGACAAGCTTAATGGTTTTTCCTTGGCTACGTCTTACTACACCAAAGCGAGTCGAGACAGTGGCCGTGAAGCAGCA
TTGAATACCTTAAAACAACATCCAAACGTGAATTTTATCTACGCATGCTCTACCGACGTAGCTCTTGGAGCAGCCGATGC
CTTGAACGAGTTGGATCGTAAAGATGTGGTTGTAAACGGCTGGGGCGGTGGCTCCGCTGAGTTAGAAGCCATTCAAAATG
GTGAACTTGATGTAACCGTTATGAGAATGAATGATGATACAGGAGTAGCAATGGCAGAAGCGATCAAGTGGGATCTAGAA
GATAAGGAAGTGCCTTTAGTGTATTCCGGTACTTTTGAGTTGGTGACCAGTGCCGATTCGGATGAAAAAATCGAAGCTCT
TAAAAAAAGAGCGTTTCGGTATTCAGATCGCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(60-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

66.374

95.798

0.636