Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   LY387_RS16980 Genome accession   NZ_CP090439
Coordinates   85421..86602 (+) Length   393 a.a.
NCBI ID   WP_042471269.1    Uniprot ID   A0A090RUY6
Organism   Vibrio maritimus strain BH16     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 80421..91602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS16965 - 81172..82170 (-) 999 WP_234496945.1 CobW family GTP-binding protein -
  LY387_RS16970 clcA 82712..84109 (+) 1398 WP_234496946.1 H(+)/Cl(-) exchange transporter ClcA -
  LY387_RS16975 - 84310..85197 (+) 888 WP_234497861.1 TDT family transporter -
  LY387_RS16980 cqsA 85421..86602 (+) 1182 WP_042471269.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LY387_RS16985 - 86676..88724 (-) 2049 WP_234496947.1 hybrid sensor histidine kinase/response regulator -
  LY387_RS16990 folE 88920..89573 (-) 654 WP_234496948.1 GTP cyclohydrolase I FolE -
  LY387_RS16995 moeA 89779..91014 (+) 1236 WP_234497862.1 molybdopterin molybdotransferase MoeA -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43884.90 Da        Isoelectric Point: 6.4088

>NTDB_id=642461 LY387_RS16980 WP_042471269.1 85421..86602(+) (cqsA) [Vibrio maritimus strain BH16]
MHLTQIKKSLPEFITKKHEHFIADRISSNTENHPVVCGGRPTSNDVVMQTNDYLCLHDHYEIQEAHIQGIRETKESLLMS
GVYLLGEEKESDFESKLARHVGFESCLVAQSGWTANVNLLQAICDKDTNVYVDFFAHASLWEGARIAGAKVHMFMHNNIK
HLKRQISRNGSGIILVDSIYSTVGTVAPLVDLVSLAYEFDCALVVDESHSLGTHGPRGAGLVAELGLTEHVDYITASLAK
TYAYRAGVILANEKTNYCVPMVAFPAIFSSTMLPYELARLSKTHDVIVSSEKRRQTLNENAQYLNKELRSIGFAIQSESQ
IIGLETGDVENTIKVRNYFEENGVFGSVFAPPATPNNKHILRLSINAMHTKQDLDKVIEVCRSAWLNNDLIFY

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=642461 LY387_RS16980 WP_042471269.1 85421..86602(+) (cqsA) [Vibrio maritimus strain BH16]
ATGCACTTAACTCAGATTAAAAAGTCTCTCCCAGAATTTATTACTAAAAAGCATGAGCATTTTATTGCGGACAGGATCAG
CTCGAATACAGAAAATCATCCTGTTGTTTGTGGCGGTCGACCAACTAGCAACGATGTTGTAATGCAAACAAATGACTACC
TTTGCCTGCATGACCACTACGAAATTCAAGAAGCTCATATTCAGGGAATACGCGAAACCAAAGAAAGCTTACTCATGTCC
GGTGTTTATTTGCTGGGCGAAGAAAAAGAGAGTGACTTCGAATCGAAATTGGCGCGTCATGTTGGGTTCGAAAGCTGCTT
AGTTGCTCAGTCAGGCTGGACTGCGAATGTAAACCTTCTGCAAGCTATCTGCGACAAAGATACAAACGTCTACGTTGATT
TCTTTGCCCATGCTTCATTGTGGGAAGGGGCACGCATTGCAGGGGCCAAGGTGCACATGTTTATGCACAACAATATCAAG
CACCTGAAGCGTCAAATATCGAGAAACGGCAGCGGAATCATTCTTGTAGATTCTATTTACAGTACCGTTGGCACGGTTGC
TCCACTGGTGGATCTCGTTTCGCTTGCCTACGAGTTTGATTGTGCCTTGGTCGTTGACGAATCTCATTCGCTAGGAACCC
ATGGTCCACGAGGGGCTGGTCTCGTTGCCGAGCTGGGGCTTACCGAGCATGTTGATTACATTACCGCGAGTCTCGCTAAA
ACATATGCCTATCGCGCTGGTGTTATTTTAGCCAATGAGAAAACCAACTATTGCGTGCCAATGGTCGCTTTTCCGGCAAT
TTTTAGTTCAACAATGCTGCCTTACGAACTCGCTCGACTAAGCAAAACACACGACGTCATCGTAAGCTCTGAGAAGAGAC
GACAAACACTCAACGAGAACGCTCAATACCTAAATAAGGAACTGCGTTCCATTGGCTTTGCCATTCAAAGTGAATCGCAA
ATCATAGGTTTGGAAACTGGTGATGTAGAAAACACGATTAAAGTAAGAAACTACTTTGAGGAAAACGGTGTGTTTGGCTC
AGTGTTTGCCCCACCAGCGACACCTAACAATAAGCACATACTAAGATTATCCATCAATGCGATGCACACTAAGCAGGATC
TCGATAAAGTCATAGAGGTTTGCCGATCAGCTTGGCTGAACAACGACCTTATCTTCTATTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(49-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090RUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

53.627

98.219

0.527