Detailed information NTG0642448

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LY387_RS13930
• Genome accession: NZ_CP090438
• Coordinates: 3070046..3071029 (-)
• Length: 327 a.a.
• NCBI ID: WP_042475947.1
• Uniprot ID: A0A090SPT2
• Organism: Vibrio maritimus strain BH16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3065046..3076029

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LY387_RS13910	-	3065353..3066870 (-)	1518	WP_234494530.1	inorganic triphosphatase	-
LY387_RS13915	-	3067077..3067757 (+)	681	WP_128647969.1	TIGR00153 family protein	-
LY387_RS13920	-	3067882..3069144 (+)	1263	WP_234494531.1	inorganic phosphate transporter	-
LY387_RS13925	-	3069365..3069976 (+)	612	WP_042475948.1	TIGR04211 family SH3 domain-containing protein	-
LY387_RS13930	rpoS	3070046..3071029 (-)	984	WP_042475947.1	RNA polymerase sigma factor RpoS	Regulator
LY387_RS13935	nlpD	3071148..3072119 (-)	972	WP_234494532.1	murein hydrolase activator NlpD	-
LY387_RS13940	-	3072120..3072743 (-)	624	WP_128647967.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LY387_RS13945	surE	3072747..3073508 (-)	762	WP_128647966.1	5'/3'-nucleotidase SurE	-
LY387_RS13950	truD	3073514..3074491 (-)	978	WP_234494534.1	tRNA pseudouridine(13) synthase TruD	-
LY387_RS13955	ispF	3074504..3074983 (-)	480	WP_128647964.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LY387_RS13960	ispD	3074980..3075690 (-)	711	WP_234494535.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LY387_RS13965	ftsB	3075687..3075968 (-)	282	WP_128647962.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37356.11 Da
• Isoelectric Point: 4.6701

>NTDB_id=642448 LY387_RS13930 WP_042475947.1 3070046..3071029(-) (rpoS) [Vibrio maritimus strain BH16]
MSISNAVTKNENFDIENESVDVVQSTLTNDDSNSEAEEKDLYDASAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALKG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAQKLDKPVSDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDSTHSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLRDILVKQGLNMES
LFNFDDD

Nucleotide

• Length: 984 bp

>NTDB_id=642448 LY387_RS13930 WP_042475947.1 3070046..3071029(-) (rpoS) [Vibrio maritimus strain BH16]
ATGAGTATCAGCAATGCAGTAACCAAGAACGAAAACTTCGACATTGAAAACGAATCCGTTGATGTTGTGCAGTCAACATT
GACCAATGATGATTCCAACTCAGAAGCCGAAGAGAAAGACCTGTACGATGCCTCGGCCAAAAGCCTGGATGCGACCCAGC
TCTATCTAGGGGAAATTGGCTTCTCACCACTACTTACCGCTGAAGAAGAAGTTCTTTATGCAAGACGTGCACTCAAAGGA
GATGAAGCTGCACGTAAACGTATGATTGAAAGTAACCTTCGTCTCGTTGTGAAAATCTCTCGACGCTACAGCAACCGTGG
CCTTGCACTCCTTGATCTCATCGAAGAGGGCAATCTAGGTTTGATCCGTGCTGTAGAGAAGTTTGACCCTGAACGTGGCT
TCCGATTCTCAACCTATGCGACCTGGTGGATCCGCCAAACTATTGAACGTGCTTTGATGAATCAGACGCGCACCATTCGT
TTGCCAATTCACGTCGTCAAAGAGCTGAATATTTACCTTCGTACGGCTCGTGAACTGTCGCAAAAGCTTGACCATGAGCC
GACCGCTGAAGAGATCGCTCAAAAACTCGATAAGCCGGTCAGCGATGTATCTAAAATGCTTCGCCTCAATGAGCGCATTA
GCTCAGTCGATACGCCAATTGGTGGAGATGGTGAAAAGGCGCTACTGGATATCATTCCTGATTCAACCCATTCTGATCCA
GAAGTATCAACCCAAGACGATGACATTAAATCATCACTTATTCATTGGTTAGATGAGCTAAATCCTAAACAAAAAGAGGT
GCTGGCTCGAAGGTTTGGTCTTCTTGGTTACGAGCCATCGACACTTGAAGAGGTTGGCAGAGAGATTAACCTCACTCGTG
AACGTGTTCGTCAGATCCAAGTTGAAGGGCTTCGCAGGTTGCGCGATATCCTAGTGAAACAGGGTTTGAATATGGAGTCG
CTGTTCAACTTCGATGACGATTAG

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70, region 4 (Sigma70_r4) (256-308)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A090SPT2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.635	100	0.844