Detailed information NTG0642447

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: LY387_RS13840
• Genome accession: NZ_CP090438
• Coordinates: 3043461..3046847 (+)
• Length: 1128 a.a.
• NCBI ID: WP_234494520.1
• Uniprot ID: -
• Organism: Vibrio maritimus strain BH16
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 3038461..3051847

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LY387_RS13820	erpA	3038770..3039111 (-)	342	WP_042475971.1	iron-sulfur cluster insertion protein ErpA	-
LY387_RS13825	hemL	3039427..3040719 (+)	1293	WP_128648001.1	glutamate-1-semialdehyde 2,1-aminomutase	-
LY387_RS13830	-	3041062..3042135 (+)	1074	WP_419153449.1	AI-2E family transporter	-
LY387_RS13835	rsmC	3042202..3043224 (+)	1023	WP_234494519.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
LY387_RS13840	chiS	3043461..3046847 (+)	3387	WP_234494520.1	response regulator	Regulator
LY387_RS13845	acnB	3046972..3049569 (-)	2598	WP_234494521.1	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 126832.59 Da
• Isoelectric Point: 5.4748

>NTDB_id=642447 LY387_RS13840 WP_234494520.1 3043461..3046847(+) (chiS) [Vibrio maritimus strain BH16]
MLKLRRKQKFKRLQNTLMMAFLVLSITPLTIIALFFLNAHSQDLRDQSTSHLVSLRDTKQQQLLNYFQAQESEAMGFVRS
ELAYASGGRFYGLVNAFQRLGDDVEQARKHAQERYIQGSGDKIKTAILPDSSSFVGSERYRLLHKRYHRAFMEHLKRSDF
DDIILVDLSGNVTYSVYKYDYFGTNLETGDFSTQVLGETFKRLKSEVSSKRKENEEYTPVIVSDFARYNDKQYAWIGAPI
IQQGYLHSYAMFRLPISGITKLITDGTPADIDILLVGSDHSAKLLGLTPETIANSDKVIAMALSGISDVSSYQSALGEDY
FAAFTPIALGTTHWALVVETPEAIAFASVKQLETLFVIAMLTAIVVVVAASHYLSNFITSPLLKLTWAAERASGGDLEPS
IISLERGDEIGRLALSFERMRRSIKDKIELIKSQNQELEQSLAIIKKQNEELQVADKLKDEFLATTSHELRTPLHGMIGI
AEAMISGANGPIGANHKYQLDIIVNSGQRLASLVDDLLDYHKMRYGSLDIERSALSLTSTTQLVIELSNHLLGDKKIRII
NQVLEPLPYVSADPQRLEQVLYNLLGNAIKYTNEGKIVLSATAMNDHIRVQVVDTGQGIPAQQLEHIFEPLVQAGHDSGH
YRQGAGLGLSISRQLIELMGGSLYVSSQPHVGTTFSFTLPLATQEEIEKQSQTNSVSHFQIAESTELQLEEEEVLPENSD
GPVLLIADDEPVNLRILESFLRLEGYQVRLAKDGIEALEQIEKEKPELLLLDIMMPGMSGFEVCEAVREKYDHAALPVIM
LTALNQPEDRVRGFELGANDYLAKPFSKPELAARIAAHLQASKAEERRAENQTLKYELKQRALVEASLLETQGRLIEQLD
NAPEAILCIREDLKVQFANQSAARLFKRTIEQLKRASIEELIAPKFIHLNQEHYFGEIDAFVDDVRQHINADVLTLPQGS
GLKSIYIFEQGQSLDASRVKNLETAIDALSTYAIEGDKAKLRELKELGGEFTRLADKAEGEEKSRPEIMREVLVETMTSS
LSYWEEVTGQSKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRLETLPKTPRWRTVLSSVEYILEHCHKQGPERDYIISLRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=642447 LY387_RS13840 WP_234494520.1 3043461..3046847(+) (chiS) [Vibrio maritimus strain BH16]
ATGTTGAAGTTGCGTCGCAAACAGAAGTTCAAACGGTTGCAAAATACCTTGATGATGGCGTTTTTGGTGTTAAGTATTAC
GCCGCTGACGATCATCGCTTTGTTCTTTCTAAACGCACACAGCCAAGATCTCCGCGATCAAAGCACCTCTCATCTTGTGT
CACTGCGCGACACCAAACAACAACAGCTACTCAACTATTTCCAAGCGCAAGAATCTGAAGCCATGGGGTTTGTTCGCTCT
GAGCTTGCCTATGCAAGTGGTGGACGCTTCTATGGCCTGGTCAATGCATTTCAACGTCTTGGTGACGATGTAGAGCAAGC
AAGAAAGCATGCCCAGGAGCGCTATATTCAAGGCTCTGGTGATAAAATCAAAACCGCGATTCTCCCAGATTCCAGCAGTT
TTGTTGGTAGTGAGCGCTACCGACTGTTGCACAAACGTTATCATCGAGCTTTTATGGAGCACCTAAAGCGCTCCGATTTT
GACGACATCATTTTAGTGGATCTGTCGGGTAACGTGACCTACTCGGTATACAAATACGACTACTTCGGTACCAATCTAGA
AACCGGTGATTTTTCAACGCAGGTATTAGGTGAAACCTTTAAGCGTCTCAAGTCAGAGGTCAGCAGCAAACGCAAAGAAA
ATGAAGAATACACGCCTGTCATTGTCTCGGATTTTGCTCGCTACAATGACAAACAGTACGCTTGGATCGGCGCGCCCATC
ATACAGCAAGGCTATCTTCACAGTTATGCCATGTTCCGCTTGCCGATAAGTGGCATCACCAAACTCATCACTGACGGCAC
ACCAGCAGACATTGATATTCTTTTAGTTGGTAGCGATCACTCAGCGAAATTACTCGGACTCACGCCAGAAACTATCGCCA
ACAGTGACAAAGTCATCGCCATGGCGCTATCAGGCATCTCGGATGTCAGCAGCTATCAAAGTGCCCTAGGTGAAGATTAC
TTTGCCGCATTCACTCCTATTGCGCTGGGCACAACACATTGGGCGTTAGTTGTCGAAACGCCAGAAGCCATCGCGTTTGC
CAGCGTAAAACAGCTTGAAACCTTATTTGTGATCGCCATGCTCACCGCCATCGTTGTGGTGGTTGCTGCCTCGCATTACC
TGTCTAACTTCATTACCTCACCACTTCTCAAGTTAACATGGGCAGCGGAGCGTGCCTCTGGTGGCGATCTAGAACCTTCC
ATTATTAGCCTAGAGCGCGGTGACGAAATTGGTCGCCTGGCATTGAGCTTTGAGCGAATGAGACGCTCGATTAAAGACAA
GATTGAGCTGATTAAGAGTCAAAACCAAGAGCTCGAACAGAGCCTTGCCATCATCAAGAAACAAAATGAGGAGTTGCAGG
TTGCAGACAAACTAAAAGATGAGTTCCTAGCCACTACCTCTCATGAACTTCGAACCCCACTGCACGGCATGATAGGCATC
GCTGAGGCAATGATCTCTGGCGCGAATGGACCTATCGGGGCGAATCACAAGTACCAGCTAGACATTATCGTCAACAGCGG
ACAGCGCCTCGCAAGCTTAGTCGACGATCTACTCGATTATCACAAAATGCGTTATGGCAGCCTGGATATAGAGCGCTCTG
CGCTTAGCCTAACCAGCACCACGCAGCTGGTCATCGAACTTTCTAACCACCTACTCGGTGATAAAAAAATCCGCATAATC
AACCAGGTACTAGAGCCCCTTCCTTATGTATCGGCGGATCCACAACGTTTGGAACAGGTACTGTATAACCTACTCGGCAA
TGCCATTAAATACACCAACGAGGGTAAGATCGTTCTCTCTGCCACGGCTATGAATGACCACATTCGTGTTCAGGTCGTCG
ATACAGGTCAAGGCATTCCTGCCCAGCAACTTGAACACATTTTTGAGCCACTCGTTCAAGCTGGGCACGATTCAGGTCAC
TATCGTCAAGGCGCAGGCCTAGGGCTCTCTATCAGCCGTCAATTAATTGAACTGATGGGTGGCTCACTCTACGTGAGTAG
TCAACCGCATGTTGGCACGACGTTTAGCTTCACGCTTCCTCTTGCGACCCAAGAAGAAATTGAAAAACAATCTCAAACAA
ACAGCGTCAGTCACTTTCAGATCGCCGAATCCACTGAGTTGCAGCTCGAAGAGGAAGAAGTACTGCCAGAGAACTCTGAT
GGTCCTGTGCTGCTGATCGCCGATGATGAGCCGGTTAACCTTCGAATCCTTGAGAGCTTCTTAAGGCTTGAGGGCTATCA
AGTCAGGCTTGCAAAAGACGGCATAGAGGCCTTAGAGCAGATTGAAAAAGAGAAACCAGAGCTACTGCTTCTCGATATCA
TGATGCCAGGAATGAGTGGTTTTGAAGTGTGTGAAGCCGTGCGAGAGAAATATGACCACGCCGCCCTGCCCGTGATTATG
CTGACCGCACTTAACCAACCAGAAGATAGAGTGCGCGGTTTCGAGCTCGGCGCCAATGACTATTTAGCGAAGCCGTTTAG
CAAGCCTGAACTCGCAGCCCGTATCGCGGCGCATCTGCAAGCCAGTAAAGCCGAGGAACGTCGCGCCGAAAACCAAACCC
TTAAGTACGAGCTCAAACAGCGAGCATTAGTGGAGGCAAGTCTACTCGAGACACAAGGTCGATTAATAGAGCAGCTTGAT
AATGCGCCTGAAGCCATCTTGTGTATTCGCGAAGATTTAAAGGTACAGTTTGCTAACCAAAGTGCGGCTCGATTATTCAA
GCGCACCATTGAGCAACTGAAACGAGCTAGCATCGAAGAGTTGATTGCACCTAAGTTTATCCACCTCAATCAAGAGCATT
ACTTTGGCGAAATAGACGCCTTCGTCGACGATGTACGTCAACATATCAATGCCGATGTTCTTACTCTACCGCAAGGTTCA
GGTCTGAAGAGTATCTATATCTTCGAGCAGGGACAATCCCTTGATGCAAGCAGGGTTAAGAACTTAGAGACCGCTATAGA
TGCTCTTTCTACTTACGCTATTGAGGGCGATAAAGCCAAACTCAGAGAGCTCAAAGAGCTTGGTGGCGAGTTTACTCGCT
TGGCAGATAAAGCTGAGGGCGAAGAAAAATCTCGCCCAGAAATCATGCGTGAAGTCCTTGTTGAGACCATGACAAGTTCA
CTAAGTTACTGGGAAGAGGTGACGGGACAGTCCAAGTTTGCTTTTGCAGAGCAAAGTGGTCTTTGGCGCGTCTATCTTGA
TAGAAGCACACTGCAAACCAGAACACTCGACAAGTATTTGAGGCTAGAAACCTTACCGAAGACACCGAGGTGGCGCACGG
TACTCAGCTCGGTAGAGTACATTCTAGAGCACTGCCACAAGCAAGGACCTGAGCGAGATTACATCATTAGCCTACGAGAT
AAGCTGCAGCGATTACTCACCAGCTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (725-835)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

• HAMP domain (HAMP) (374-425)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-682)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	71.036	100	0.711