Detailed information NTG0642438

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: LY387_RS07610
• Genome accession: NZ_CP090438
• Coordinates: 1651262..1652683 (-)
• Length: 473 a.a.
• NCBI ID: WP_234495942.1
• Uniprot ID: -
• Organism: Vibrio maritimus strain BH16
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1646262..1657683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LY387_RS07585	-	1647297..1647653 (+)	357	WP_234495937.1	VOC family protein	-
LY387_RS07590	purT	1647708..1648883 (-)	1176	WP_234495938.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
LY387_RS07595	cdd	1649046..1649933 (-)	888	WP_234495939.1	cytidine deaminase	-
LY387_RS07600	-	1650114..1650800 (-)	687	WP_234495940.1	CidB/LrgB family autolysis modulator	-
LY387_RS07605	-	1650802..1651167 (-)	366	WP_234495941.1	CidA/LrgA family protein	-
LY387_RS07610	sbcB	1651262..1652683 (-)	1422	WP_234495942.1	exodeoxyribonuclease I	Machinery gene
LY387_RS07615	-	1652896..1653870 (+)	975	WP_234495943.1	ABC transporter substrate-binding protein	-
LY387_RS07620	-	1653860..1655938 (+)	2079	WP_234495944.1	putative bifunctional diguanylate cyclase/phosphodiesterase	-
LY387_RS07625	-	1656041..1657408 (+)	1368	WP_234495945.1	Na+/H+ antiporter NhaC family protein	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54413.66 Da
• Isoelectric Point: 4.7643

>NTDB_id=642438 LY387_RS07610 WP_234495942.1 1651262..1652683(-) (sbcB) [Vibrio maritimus strain BH16]
MSQHQPTFFFFDYETWGVSPAKDRPCQFAGVRTDADFNIIGEPLVIYCQPPADYLPSPEAALITGITPQLCQEKGLPEPE
FIAKIHEQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENEEGFTS
FKLEHLSVANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFYSMRTKRKLNELVDIVNMTPLMHVSGMLGKECQYT
SWVVPIAWHPTNQNAVIVADLAKDPQPLLDLDVEALHKRLYTRHDDLAEGELPVPLKLIHLNKCPILAPAKTLTAENAGV
IGIDREQCLKNLALIKQNPEIREKLIGLYSIEREFENDDDVDTQLYSGFFTPADRSAMDIIRDTDPNNLSALDISFSDSR
VEPLLFRYRARHFAWTLDETEQQKWANHCREFFESRIEDYMLNMENLVHEHESDEKKLAILKSVYRYVERLVS

Nucleotide

• Length: 1422 bp

>NTDB_id=642438 LY387_RS07610 WP_234495942.1 1651262..1652683(-) (sbcB) [Vibrio maritimus strain BH16]
ATGTCCCAACACCAACCCACTTTTTTCTTCTTTGATTACGAGACTTGGGGTGTTAGCCCAGCGAAAGACAGACCTTGTCA
ATTTGCGGGCGTTAGGACAGATGCTGACTTCAATATCATTGGCGAACCTTTAGTTATTTATTGCCAGCCACCTGCTGATT
ATCTGCCTTCGCCAGAAGCTGCGCTGATTACCGGAATCACGCCTCAACTTTGTCAGGAAAAAGGGCTTCCAGAGCCTGAA
TTTATCGCGAAGATCCATGAGCAATTAGCGACGCCAAATACCACAAGCCTCGGCTATAACAGTATTCGCTTCGACGATGA
AGTCACTCGATATACCTGCTATCGCAACTTCATCGACCCATATGCATGGAGCTGGCAAAATGGCAATTCACGCTGGGACT
TGCTCGATGTAATGAGAGCCTGCCATGCTCTCCGTCCTGAGGGTATTGAGTGGCCTGAAAACGAGGAAGGCTTTACCAGT
TTCAAGCTAGAGCACCTTTCTGTCGCGAACGGTATTGAGCACGAAAACGCACACGATGCGATGGCTGACGTCATTGCAAC
CATTGAGCTTGCTAAAAAAGTTAAAGCAGCACAGCCTAAGTTGTTCGACTACTTCTACTCAATGCGAACCAAACGCAAAC
TCAATGAGCTGGTAGATATCGTCAATATGACGCCGCTTATGCACGTATCTGGAATGCTCGGTAAAGAGTGCCAATACACT
AGCTGGGTCGTACCAATTGCATGGCACCCAACAAACCAAAATGCAGTGATTGTTGCCGATCTCGCCAAAGATCCTCAGCC
GTTACTAGATTTAGATGTCGAAGCACTTCACAAAAGGCTCTACACCAGACACGATGATCTAGCAGAAGGTGAACTGCCTG
TTCCACTTAAACTTATTCATCTAAACAAATGCCCTATTCTTGCTCCAGCTAAAACGCTAACCGCAGAAAATGCAGGTGTG
ATCGGTATCGATAGAGAACAATGTTTGAAGAATCTTGCTCTCATCAAGCAGAACCCTGAAATACGAGAAAAGCTAATTGG
GTTATATAGCATTGAAAGAGAGTTTGAAAACGATGACGACGTTGATACTCAGCTCTACAGTGGTTTCTTTACACCAGCAG
ATCGCAGTGCGATGGATATCATTCGAGATACCGATCCAAACAATCTATCGGCATTAGACATTAGTTTTAGTGACTCTCGC
GTCGAACCTCTGTTATTTAGATACCGAGCTCGCCATTTCGCGTGGACCCTTGATGAGACTGAGCAGCAGAAGTGGGCAAA
TCATTGTCGTGAATTTTTCGAAAGTCGTATTGAAGACTACATGCTAAATATGGAAAACTTAGTTCACGAACATGAGTCTG
ACGAGAAGAAGCTCGCCATACTAAAATCCGTCTACCGCTACGTGGAGCGTCTCGTTTCTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

• Exonuclease (RNase_T) (10-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.298	99.366	0.778