Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LY387_RS01790 Genome accession   NZ_CP090438
Coordinates   382776..383294 (+) Length   172 a.a.
NCBI ID   WP_042473253.1    Uniprot ID   A0A090RV94
Organism   Vibrio maritimus strain BH16     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 377776..388294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS01780 - 378060..380918 (+) 2859 WP_234495115.1 M16 family metallopeptidase -
  LY387_RS01785 gshA 381024..382613 (+) 1590 WP_234495116.1 glutamate--cysteine ligase -
  LY387_RS01790 luxS 382776..383294 (+) 519 WP_042473253.1 S-ribosylhomocysteine lyase Regulator
  LY387_RS01795 ruvX 383403..383828 (-) 426 WP_234495117.1 Holliday junction resolvase RuvX -
  LY387_RS01800 - 383894..384463 (-) 570 WP_128649352.1 YqgE/AlgH family protein -
  LY387_RS01805 gshB 384496..385443 (-) 948 WP_234495118.1 glutathione synthase -
  LY387_RS01810 rsmE 385457..386188 (-) 732 WP_128649346.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LY387_RS01815 - 386268..386975 (-) 708 WP_234496036.1 endonuclease -
  LY387_RS01820 - 387045..387554 (-) 510 WP_234495119.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19151.96 Da        Isoelectric Point: 4.7277

>NTDB_id=642432 LY387_RS01790 WP_042473253.1 382776..383294(+) (luxS) [Vibrio maritimus strain BH16]
MPLLDSFTVDHTKMHAPAVRVAKTMQTPKGDTITVFDLRFTIPNKDILSERGIHTLEHLYAGFMRAHLNGDQVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLNAMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKAIAEKIIEAGIQVNKNDELA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=642432 LY387_RS01790 WP_042473253.1 382776..383294(+) (luxS) [Vibrio maritimus strain BH16]
ATGCCACTACTGGATAGCTTTACGGTAGACCACACTAAGATGCACGCTCCAGCGGTACGCGTTGCGAAAACAATGCAAAC
CCCTAAAGGCGACACGATTACTGTTTTCGACCTACGTTTTACGATCCCAAACAAAGACATCTTGTCTGAGCGCGGCATTC
ACACACTAGAGCACCTATATGCGGGCTTCATGCGTGCACATCTAAATGGTGATCAGGTTGAGATCATCGATATCTCTCCA
ATGGGTTGTCGTACTGGTTTTTACATGAGCTTGATTGGTACCCCATCTGAGCAGCAAGTTGCTGACGCTTGGCTAAATGC
AATGCAAGATGTACTGAAAGTCGAGAGCCAGAACAAGATCCCTGAGCTTAACGAGTATCAATGTGGTACTGCAGCGATGC
ACTCACTGGATGAAGCGAAAGCGATCGCAGAGAAGATCATTGAAGCGGGTATTCAAGTGAATAAGAACGATGAGCTTGCA
TTGCCTGAGTCTATGTTGCAAGAGCTGAAAGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090RV94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884