Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LY387_RS01150 Genome accession   NZ_CP090438
Coordinates   247376..248383 (-) Length   335 a.a.
NCBI ID   WP_234495057.1    Uniprot ID   -
Organism   Vibrio maritimus strain BH16     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 242376..253383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS01125 - 242725..243642 (-) 918 WP_234495052.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  LY387_RS01130 - 243832..244128 (+) 297 WP_234495053.1 GIY-YIG nuclease family protein -
  LY387_RS01135 hslU 244499..245833 (-) 1335 WP_234495054.1 HslU--HslV peptidase ATPase subunit -
  LY387_RS01140 hslV 246047..246589 (-) 543 WP_234495055.1 ATP-dependent protease subunit HslV -
  LY387_RS01145 - 246749..247294 (-) 546 WP_234495056.1 SPOR domain-containing protein -
  LY387_RS01150 cytR 247376..248383 (-) 1008 WP_234495057.1 DNA-binding transcriptional regulator CytR Regulator
  LY387_RS01155 priA 248654..250855 (-) 2202 WP_234495058.1 primosomal protein N' -
  LY387_RS01160 rpmE 251139..251357 (+) 219 WP_006071169.1 50S ribosomal protein L31 -
  LY387_RS01165 - 251689..252948 (+) 1260 WP_042477146.1 malic enzyme-like NAD(P)-binding protein -
  LY387_RS01170 metJ 253041..253361 (-) 321 WP_006071165.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36833.47 Da        Isoelectric Point: 6.1431

>NTDB_id=642427 LY387_RS01150 WP_234495057.1 247376..248383(-) (cytR) [Vibrio maritimus strain BH16]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQSKKRETSFVNLVFTKQADGMLLLGTDLPFDISKPEQKNLPPIVMACEFAPELELPTVHIDN
LTSAFEAVNYLSNLGHKRIAQIAGPDSAFLCRFRQQGYQQALRRAGLPMNPAYTVKGDFTFEAGARLVRTLLALPEPPTA
IFCHNDVMAIGAMQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTVSQPRYEIGRQAMYMMLEVLKGADVRAGSRLLD
TELVIRDSAAPPRIL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=642427 LY387_RS01150 WP_234495057.1 247376..248383(-) (cytR) [Vibrio maritimus strain BH16]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTCTCTACGGCTACGGTATCAAGAGCTCTGATGAACCCAGAAAA
AGTCTCATCATCTACTCGTAAGCGAGTGGAAGATGCGGTTTTAGAAGCTGGCTATTCTCCAAATTCACTCGCACGCAATC
TTCGCAGAAATGAATCTAAAACCATTGTGACGATTGTACCTGACATCTGTGACCCATATTTCTCCGAGATCATTCGTGGT
ATTGAAGATGCCGCTATGGAGCATGGCTACCTCGTATTACTGGGGGATAGCGGTCAGTCGAAAAAACGTGAAACCTCGTT
TGTGAACCTTGTATTCACCAAACAAGCTGATGGTATGTTGCTGTTAGGAACGGATCTTCCTTTCGACATCAGTAAACCAG
AGCAAAAGAACCTGCCACCAATCGTCATGGCGTGTGAATTTGCGCCTGAGCTTGAGCTGCCAACCGTTCACATTGATAAC
CTGACCTCAGCGTTTGAAGCGGTGAACTACCTATCAAACCTTGGGCATAAGCGAATCGCTCAGATTGCTGGTCCAGACTC
AGCATTCTTATGCCGGTTTAGACAGCAAGGCTACCAGCAAGCCCTGCGCCGTGCTGGTCTGCCAATGAATCCCGCGTACA
CCGTGAAGGGTGATTTCACCTTTGAAGCTGGCGCTAGACTTGTTCGCACCCTTTTAGCACTGCCTGAGCCACCAACCGCA
ATATTCTGTCACAATGATGTGATGGCGATTGGTGCCATGCAAGAGGCGAAGAAATTAGGGCTGCGTGTTCCTCAAGATCT
CTCTGTCGTCGGCTTCGATGATATCCAATTTGCACAGTACTGCGATCCACCGTTGACGACTGTCTCACAGCCTCGCTATG
AGATTGGACGACAAGCCATGTACATGATGCTCGAAGTGCTAAAAGGTGCCGATGTCAGAGCAGGCTCTCGTCTTCTCGAT
ACAGAACTTGTGATCCGCGACAGTGCGGCTCCTCCAAGAATCCTGTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

88.855

99.104

0.881
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.403

0.869