Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LZP85_RS19790 Genome accession   NZ_CP090431
Coordinates   3846669..3848048 (+) Length   459 a.a.
NCBI ID   WP_094913094.1    Uniprot ID   A0A8I1MJC3
Organism   Priestia flexa strain DMP08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3841669..3853048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP85_RS19770 (LZP85_19770) - 3841973..3842434 (+) 462 WP_061784785.1 CtsR family transcriptional regulator -
  LZP85_RS19775 (LZP85_19775) - 3842472..3843011 (+) 540 WP_025909696.1 UvrB/UvrC motif-containing protein -
  LZP85_RS19780 (LZP85_19780) - 3843016..3844083 (+) 1068 WP_119542723.1 protein arginine kinase -
  LZP85_RS19785 (LZP85_19785) clpC 3844104..3846545 (+) 2442 WP_119542722.1 ATP-dependent protease ATP-binding subunit ClpC -
  LZP85_RS19790 (LZP85_19790) radA 3846669..3848048 (+) 1380 WP_094913094.1 DNA repair protein RadA Machinery gene
  LZP85_RS19795 (LZP85_19795) disA 3848054..3849130 (+) 1077 WP_078988977.1 DNA integrity scanning diadenylate cyclase DisA -
  LZP85_RS19800 (LZP85_19800) - 3849273..3850370 (+) 1098 WP_206783136.1 PIN/TRAM domain-containing protein -
  LZP85_RS19805 (LZP85_19805) ispD 3850396..3851085 (+) 690 WP_119542721.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LZP85_RS19810 (LZP85_19810) ispF 3851098..3851577 (+) 480 WP_025909703.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49666.92 Da        Isoelectric Point: 7.4549

>NTDB_id=642400 LZP85_RS19790 WP_094913094.1 3846669..3848048(+) (radA) [Priestia flexa strain DMP08]
MSKRKTKFSCQHCGYESAKWMGKCPGCGSWNSMVEEIEETKSSRRGGAFSGATSTKVQKPQSITSIESTTEPRIYTKSPE
LNRVLGGGIVRGSLVLIGGDPGIGKSTLLLQTSAQLAMNKHKVLYISGEESTKQTKLRADRLGIKAEDLYVHAETNLESI
TEAISSMNPELVIIDSIQTIYHGDVTSAPGSVSQVRECTAELMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDSVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVLNPSEIFLEERSQGAAGSVVVASMEGTRPVLVELQALISPTS
FGNPRRMSTGLDHNRVSLIMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFKDAPSNPTDVVVGEVGL
TGEVRRVSRIEQRVQEAVKLGFKRIIVPEKNLGGWKIPEGIDVVGVSTVSEALQYTLGG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=642400 LZP85_RS19790 WP_094913094.1 3846669..3848048(+) (radA) [Priestia flexa strain DMP08]
ATGAGTAAAAGAAAAACAAAGTTTTCATGTCAACATTGTGGGTATGAATCGGCTAAATGGATGGGAAAGTGTCCTGGCTG
TGGCAGTTGGAATTCAATGGTGGAAGAAATTGAAGAGACAAAGTCTTCAAGGCGAGGAGGAGCTTTTTCTGGCGCAACGT
CTACAAAGGTGCAAAAGCCTCAATCCATTACGAGTATTGAATCAACGACTGAACCAAGGATATATACAAAGTCACCCGAG
CTAAACCGTGTTTTAGGTGGAGGGATTGTTAGAGGATCACTAGTCTTAATTGGGGGAGATCCTGGTATTGGTAAATCAAC
TTTGTTGCTACAAACTTCAGCTCAGTTAGCTATGAACAAGCATAAGGTGCTTTATATATCTGGTGAGGAATCAACAAAGC
AAACAAAGCTAAGAGCAGATCGCTTAGGTATTAAAGCGGAAGATTTGTATGTGCATGCAGAAACAAACTTAGAGTCAATC
ACAGAAGCTATCTCAAGTATGAATCCAGAACTTGTTATCATTGATTCAATTCAAACAATTTATCACGGTGACGTTACATC
AGCGCCCGGAAGTGTTTCTCAAGTACGCGAGTGTACAGCAGAGTTAATGCGAATTGCAAAAACAAACGGCATAGCTATTT
TTATTGTAGGTCATGTTACTAAAGAAGGGGCTATTGCAGGTCCAAGGTTACTTGAACATATGGTAGACAGTGTTTTGTAT
TTTGAAGGAGAACGCCACCATACGTACCGGATTTTAAGAGCAGTAAAAAACCGCTTTGGTTCAACAAACGAAATGGGTAT
TTTTGAAATGAAGGAAAGTGGTCTAGAGGAAGTGCTCAACCCATCTGAAATCTTTTTAGAAGAACGATCTCAAGGTGCAG
CTGGTTCTGTCGTTGTGGCTTCAATGGAGGGTACTCGTCCCGTATTGGTAGAGTTACAAGCACTTATTAGCCCAACAAGC
TTTGGAAATCCTAGAAGAATGTCTACAGGACTTGATCATAACCGTGTCTCGCTTATTATGGCAGTGTTAGAAAAGCGAGT
AGGATTACTGTTGCAAAATCAAGATGCGTACTTAAAAGTAGCAGGTGGGGTAAAGTTAGATGAGCCAGCTATTGATTTGG
CGGTTGCGGTTAGCATTGCATCGAGTTTTAAAGATGCACCTTCAAACCCTACAGACGTAGTAGTAGGAGAAGTTGGATTA
ACAGGTGAGGTTCGAAGAGTGTCTCGCATTGAACAACGAGTGCAAGAAGCTGTGAAATTAGGATTTAAGCGAATCATTGT
TCCTGAAAAAAACTTAGGTGGTTGGAAAATACCAGAAGGCATTGACGTAGTAGGGGTGTCCACTGTGTCAGAAGCGTTAC
AGTACACGTTAGGAGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.381

100

0.754
  radA Streptococcus pneumoniae Rx1

63.216

98.911

0.625
  radA Streptococcus pneumoniae D39

63.216

98.911

0.625
  radA Streptococcus pneumoniae R6

63.216

98.911

0.625
  radA Streptococcus pneumoniae TIGR4

63.216

98.911

0.625
  radA Streptococcus mitis NCTC 12261

63.216

98.911

0.625
  radA Streptococcus mitis SK321

63.216

98.911

0.625