Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LZP85_RS18275 Genome accession   NZ_CP090431
Coordinates   3543077..3544564 (-) Length   495 a.a.
NCBI ID   WP_277627763.1    Uniprot ID   -
Organism   Priestia flexa strain DMP08     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3538077..3549564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP85_RS18240 (LZP85_18240) - 3538120..3538536 (-) 417 WP_119542655.1 DUF6470 family protein -
  LZP85_RS18245 (LZP85_18245) flgL 3538581..3539462 (-) 882 WP_119542654.1 flagellar hook-associated protein FlgL -
  LZP85_RS18250 (LZP85_18250) flgK 3539465..3540979 (-) 1515 WP_206833363.1 flagellar hook-associated protein FlgK -
  LZP85_RS18255 (LZP85_18255) - 3541000..3541440 (-) 441 WP_025909627.1 flagellar protein FlgN -
  LZP85_RS18260 (LZP85_18260) flgM 3541456..3541713 (-) 258 WP_025909626.1 flagellar biosynthesis anti-sigma factor FlgM -
  LZP85_RS18265 (LZP85_18265) - 3541926..3542327 (-) 402 WP_234561843.1 TIGR03826 family flagellar region protein -
  LZP85_RS18270 (LZP85_18270) - 3542385..3543080 (-) 696 WP_234561845.1 ComF family protein -
  LZP85_RS18275 (LZP85_18275) comFA 3543077..3544564 (-) 1488 WP_277627763.1 DEAD/DEAH box helicase Machinery gene
  LZP85_RS18280 (LZP85_18280) - 3544650..3545495 (-) 846 WP_062686858.1 DegV family protein -
  LZP85_RS18285 (LZP85_18285) - 3545612..3546049 (-) 438 WP_061786279.1 YaaR family protein -
  LZP85_RS18290 (LZP85_18290) - 3546131..3546952 (-) 822 WP_025909620.1 flagellin -
  LZP85_RS18295 (LZP85_18295) fliS 3546969..3547394 (-) 426 WP_025909619.1 flagellar export chaperone FliS -
  LZP85_RS18300 (LZP85_18300) - 3547442..3547747 (-) 306 WP_025909618.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55887.82 Da        Isoelectric Point: 8.9467

>NTDB_id=642387 LZP85_RS18275 WP_277627763.1 3543077..3544564(-) (comFA) [Priestia flexa strain DMP08]
MFLRFILHDNQLVPNGSQEAQAISRLPKWHTPAVNPTFSFNASLQQFLVGKQLLPDELASFSFSTLHEHYEQGYIHYQKS
IVKKDVMTCMRCGNQQQHLFASFHCGRCYSTCTYCRACIGMGRVSECTPLIAWKGPPLREVSSPTLTWKGKLSPAQQTAS
SQMVEAVHSKQELLVWAVCGAGKTEVLFEGISKALALGKSVCVATPRTDVVLELHPRLQQAFQELEVVALYGGSADKGKH
SSLILTTTHQLLRYYEAFDVMIIDEVDAFPYSAEPMLQYAAHKARKAESTLIYLTATPSENLKQQVKENKLAAVKIPARY
HRYPIPIPRFVWCGNWQKKLVKKKLPFTVLNWIKQRVCDDKQCFVFVPKVKWVQPVVELIQQLTPRVAGVHAEDKERKEK
VKAFREQQYIILVTTTILERGVTVPNIDVAVVGAEDEIFTESALVQISGRVGRSANFPTGDVVFFHYGQTVEMKKAKKHM
VDMNDMAKEQGLIET

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=642387 LZP85_RS18275 WP_277627763.1 3543077..3544564(-) (comFA) [Priestia flexa strain DMP08]
ATGTTTTTGCGATTTATCCTACATGACAATCAGTTAGTACCGAATGGTTCACAGGAAGCGCAGGCCATTTCACGGCTTCC
TAAATGGCATACACCCGCTGTTAACCCTACATTTTCATTTAATGCAAGCCTCCAGCAATTCCTCGTTGGCAAGCAACTAC
TCCCTGATGAACTAGCTTCATTTTCTTTTTCTACTCTTCATGAGCATTACGAACAAGGCTATATCCACTATCAAAAGTCA
ATTGTGAAAAAAGACGTGATGACCTGCATGCGCTGTGGAAATCAGCAGCAGCACTTATTTGCTTCGTTTCACTGTGGTCG
CTGTTACAGCACATGTACGTATTGCCGTGCCTGCATTGGGATGGGGCGGGTATCGGAATGTACGCCTCTTATCGCGTGGA
AAGGGCCTCCTTTACGTGAGGTTTCTTCACCAACTCTTACGTGGAAAGGAAAGCTCTCTCCTGCTCAGCAAACGGCTTCT
AGCCAAATGGTAGAAGCCGTACATTCAAAGCAAGAGCTGCTCGTGTGGGCCGTTTGTGGAGCTGGAAAAACGGAAGTTCT
CTTTGAAGGTATTTCAAAAGCGCTTGCTTTGGGTAAATCGGTATGCGTCGCCACGCCGAGAACGGACGTAGTCCTGGAGC
TTCATCCAAGGCTTCAACAAGCGTTTCAAGAGTTGGAAGTAGTGGCTCTTTACGGCGGAAGTGCTGATAAAGGGAAGCAT
TCTTCTCTGATCCTCACAACCACGCATCAGCTTTTGCGTTACTATGAAGCATTTGACGTCATGATCATTGACGAAGTAGA
CGCATTTCCTTATTCAGCAGAACCAATGTTGCAATATGCTGCCCACAAAGCTCGTAAAGCAGAATCAACCCTTATTTACT
TAACAGCAACTCCCAGTGAAAATCTTAAGCAACAGGTTAAAGAAAATAAGCTAGCAGCTGTCAAAATACCGGCTCGCTAT
CACCGCTATCCCATTCCGATACCTCGTTTTGTATGGTGTGGCAACTGGCAAAAGAAGCTTGTTAAAAAGAAGTTGCCTTT
TACCGTACTGAACTGGATTAAGCAACGAGTTTGCGATGATAAGCAGTGCTTTGTGTTTGTACCAAAAGTTAAATGGGTTC
AGCCCGTTGTAGAGCTCATCCAACAGCTAACGCCAAGGGTGGCTGGGGTGCACGCAGAAGATAAGGAGCGAAAAGAAAAG
GTAAAAGCATTTCGTGAGCAGCAGTATATCATTTTGGTTACGACAACGATTTTAGAACGAGGGGTGACTGTCCCCAATAT
TGATGTCGCTGTAGTAGGTGCTGAAGATGAAATTTTCACTGAAAGCGCGCTCGTTCAAATTTCAGGCCGAGTGGGTAGAA
GCGCAAACTTTCCAACGGGAGATGTGGTCTTTTTTCACTATGGACAAACGGTCGAAATGAAAAAAGCCAAAAAGCATATG
GTTGATATGAATGATATGGCAAAAGAACAAGGTCTGATCGAAACATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(151-299)

Helicase conserved C-terminal domain (Helicase_C)

(359-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.967

91.919

0.487