Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LZP85_RS14965 Genome accession   NZ_CP090431
Coordinates   2910586..2912304 (-) Length   572 a.a.
NCBI ID   WP_025911489.1    Uniprot ID   A0A1N6N653
Organism   Priestia flexa strain DMP08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2905586..2917304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP85_RS14945 (LZP85_14945) - 2905855..2907426 (+) 1572 WP_234561780.1 L-lactate permease -
  LZP85_RS14950 (LZP85_14950) - 2907460..2907708 (-) 249 WP_224839988.1 DUF2798 domain-containing protein -
  LZP85_RS14955 (LZP85_14955) spo0A 2908105..2908896 (-) 792 WP_094910755.1 sporulation transcription factor Spo0A -
  LZP85_RS14960 (LZP85_14960) spoIVB 2909122..2910399 (-) 1278 WP_119543449.1 SpoIVB peptidase -
  LZP85_RS14965 (LZP85_14965) recN 2910586..2912304 (-) 1719 WP_025911489.1 DNA repair protein RecN Machinery gene
  LZP85_RS14970 (LZP85_14970) ahrC 2912321..2912770 (-) 450 WP_025911491.1 transcriptional regulator AhrC/ArgR -
  LZP85_RS14975 (LZP85_14975) - 2912957..2913787 (-) 831 WP_025911493.1 TlyA family RNA methyltransferase -
  LZP85_RS14980 (LZP85_14980) dxs 2913784..2915682 (-) 1899 WP_076512153.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LZP85_RS14985 (LZP85_14985) - 2915999..2916892 (-) 894 WP_061784665.1 polyprenyl synthetase family protein -
  LZP85_RS14990 (LZP85_14990) - 2916895..2917128 (-) 234 WP_025911499.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64299.83 Da        Isoelectric Point: 4.6409

>NTDB_id=642373 LZP85_RS14965 WP_025911489.1 2910586..2912304(-) (recN) [Priestia flexa strain DMP08]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSSEFVRHGTNRAEIEGLFLIEDEHPCYEKA
KQVGVEVEDGMVVLRRDITMNGKSICRINGKLVTLGILREVGQTLMDIHGQHEHQDLMNQDRHLILLDQYGGQKVEEALS
EYREVFATYTTLKKQLEQLTENEQQMAHRLDLIQFQLDEIKAADLQPNEDEQLMDERLKISNFEKIYTSLTDAYNALHGE
QRGLDWLGVAMNHAEEISNLEDTYGEISEVISSSFYQIEDVSYRIRQQLDLLEYDPKRLNFIESRLNEISHLKRKYGQSV
DEILEYAAQIEDEIDRIENRDTHVEKIKQKLSSVAEDLLVEAKNVSEVRKQLAAELTDSIHQELQELYMAKTIFNIVFEK
LPPNQADSELSGGSVKFTKDGIDSVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSG
RVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFISKQIKDDRTTTSVLPLNEEEKTKEIARMIAGAEITDLTQQHA
QELLGLAAKIKQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=642373 LZP85_RS14965 WP_025911489.1 2910586..2912304(-) (recN) [Priestia flexa strain DMP08]
TTGTTAGCAGAACTATCAATCAAAAACTTTGCCATCATTGATGAGCTTTCAGTATCGTTTGAAAAAGGCTTAACAGTTTT
AACAGGTGAAACAGGAGCTGGTAAGTCAATTATTATTGATGCCATTCATCTGCTTGTTGGTGGACGCGGTTCATCCGAGT
TTGTAAGGCATGGAACAAATCGAGCGGAAATCGAAGGGTTATTTCTAATTGAAGACGAGCACCCTTGCTATGAAAAAGCG
AAGCAGGTGGGAGTTGAAGTTGAAGATGGCATGGTGGTACTCAGACGAGATATTACCATGAATGGTAAGAGTATTTGTCG
TATTAATGGTAAGCTAGTCACGCTTGGCATTTTACGTGAAGTGGGTCAAACACTGATGGATATTCATGGTCAGCATGAGC
ATCAGGACTTAATGAACCAAGATCGACATCTAATTCTTCTTGACCAGTATGGAGGTCAGAAGGTTGAAGAAGCACTATCA
GAATATCGAGAAGTGTTTGCTACATATACAACGCTAAAGAAACAATTAGAACAATTAACAGAAAACGAACAGCAAATGGC
CCACCGCTTAGATTTAATTCAATTTCAGCTTGATGAAATAAAAGCAGCCGACCTTCAACCAAATGAAGATGAGCAACTGA
TGGATGAGCGCCTTAAAATTTCTAACTTTGAAAAGATTTATACGTCCTTAACGGATGCATATAACGCTCTTCATGGTGAG
CAAAGAGGACTAGATTGGCTAGGTGTAGCTATGAACCATGCAGAAGAAATTTCGAATTTAGAAGACACCTATGGTGAAAT
TTCAGAAGTCATATCATCAAGCTTTTATCAAATTGAAGATGTGTCTTATCGTATTCGCCAGCAGCTCGATTTATTAGAGT
ATGATCCAAAGCGTCTCAATTTTATTGAATCACGGCTAAATGAAATTAGTCATTTAAAGCGTAAATATGGTCAAAGCGTT
GATGAAATTCTAGAGTATGCAGCTCAAATTGAAGATGAAATTGATCGAATTGAGAACCGAGATACTCATGTTGAAAAAAT
TAAACAAAAACTGTCGAGCGTAGCAGAGGACTTGCTTGTTGAAGCGAAAAATGTTTCTGAGGTTAGAAAGCAGTTAGCTG
CGGAATTAACGGATAGTATTCATCAAGAGCTACAGGAGCTTTATATGGCTAAAACTATCTTTAATATCGTATTTGAAAAG
CTACCGCCAAACCAAGCTGATAGCGAACTGAGCGGTGGTTCTGTTAAGTTTACTAAGGATGGTATTGATTCAGTGGAGTT
TTATATTTCGACAAACCCAGGAGAGCCGCTAAAGCCACTTGCTAAAGTAGCTTCTGGTGGAGAGTTATCTCGTATTATGC
TTGCACTAAAAAGTATTTTCTCTAAGCATCAAGGTGTTACGTCCATTATTTTTGATGAAGTAGATACAGGAGTGAGCGGT
CGTGTCGCACAATCCATTGGTGAAAAAATTCACGCCATCTCTGTAGATTCCCAGGTGCTTTGTATTTCGCATCTTCCACA
GGTCGCTGCTATGGCGGATACACATTTGTTTATTTCAAAGCAAATCAAAGATGATCGCACTACAACATCTGTTTTACCGT
TAAACGAAGAAGAGAAAACAAAAGAAATTGCTCGCATGATTGCAGGAGCCGAAATAACCGATTTAACGCAGCAGCATGCC
CAAGAACTGTTAGGTCTAGCAGCAAAAATTAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6N653

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.955

100

0.621