Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   LZP85_RS05790 Genome accession   NZ_CP090431
Coordinates   1141697..1142647 (+) Length   316 a.a.
NCBI ID   WP_119543014.1    Uniprot ID   -
Organism   Priestia flexa strain DMP08     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1136697..1147647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP85_RS05750 (LZP85_05750) - 1137128..1137298 (+) 171 WP_167556154.1 hypothetical protein -
  LZP85_RS05755 (LZP85_05755) - 1137634..1137837 (+) 204 WP_025907130.1 cold-shock protein -
  LZP85_RS05760 (LZP85_05760) - 1137956..1138570 (+) 615 WP_119543011.1 acetate uptake transporter -
  LZP85_RS05765 (LZP85_05765) - 1138610..1139512 (-) 903 WP_076513268.1 AEC family transporter -
  LZP85_RS05775 (LZP85_05775) - 1140140..1140442 (-) 303 WP_061785369.1 DUF6509 family protein -
  LZP85_RS05780 (LZP85_05780) - 1140568..1140861 (-) 294 WP_119543012.1 putative quinol monooxygenase -
  LZP85_RS05785 (LZP85_05785) - 1140997..1141437 (+) 441 WP_138117178.1 MarR family winged helix-turn-helix transcriptional regulator -
  LZP85_RS05790 (LZP85_05790) ceuB 1141697..1142647 (+) 951 WP_119543014.1 ABC transporter permease Machinery gene
  LZP85_RS05795 (LZP85_05795) - 1142640..1143590 (+) 951 WP_119543015.1 iron chelate uptake ABC transporter family permease subunit -
  LZP85_RS05800 (LZP85_05800) - 1143587..1144348 (+) 762 WP_061785364.1 ABC transporter ATP-binding protein -
  LZP85_RS05805 (LZP85_05805) - 1144483..1145436 (+) 954 WP_119543016.1 siderophore ABC transporter substrate-binding protein -
  LZP85_RS05810 (LZP85_05810) - 1145473..1145748 (-) 276 WP_025907150.1 DUF4282 domain-containing protein -
  LZP85_RS05815 (LZP85_05815) - 1145909..1146379 (+) 471 WP_119543017.1 N-acetyltransferase -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34687.02 Da        Isoelectric Point: 9.5404

>NTDB_id=642359 LZP85_RS05790 WP_119543014.1 1141697..1142647(+) (ceuB) [Priestia flexa strain DMP08]
MKIRYLIILLFLLSLISLFIGVSPVNIYGVLSFDQEQIQVLLISRFPRLISIIIAGVSLSICGLIMQQLTRNKFVSPTTA
GTMDSARLGVLVALMLFTSASPIQKMLVAFVFALIGTFIFMKILDSIKVKDRIFIPLVGLMFGNVIGSITTFFAYKNDLI
QSIGSWLQGDFSTIISGQYELIYLSVPLMIIAYLYANKFTIAGMGEDFATNLGLPFKQVVNIGLVIVALVSSIVLLTVGM
IPFLGLIIPNIVSIYAGDHLKNSLPQTALLGAVFVLICDILGRVIIYPYEISIGMMVGVIGSGIFLYMLIRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=642359 LZP85_RS05790 WP_119543014.1 1141697..1142647(+) (ceuB) [Priestia flexa strain DMP08]
GTGAAAATTAGGTATCTTATTATTTTACTATTTTTATTATCGCTTATTTCGTTATTTATCGGCGTATCACCAGTAAATAT
TTATGGGGTCTTATCCTTTGATCAAGAGCAAATTCAAGTGCTACTAATTAGTCGTTTTCCACGATTGATTAGCATCATTA
TTGCTGGAGTAAGCTTAAGTATATGTGGATTGATTATGCAGCAGCTGACGAGAAATAAATTTGTTTCTCCGACGACCGCT
GGAACCATGGATTCTGCACGCTTAGGTGTTTTGGTAGCATTGATGTTATTCACATCAGCTAGTCCAATTCAAAAAATGTT
GGTTGCATTTGTTTTCGCTTTAATTGGAACCTTCATTTTTATGAAGATTTTGGATTCTATCAAAGTAAAAGATCGAATTT
TTATTCCTCTTGTTGGTTTGATGTTTGGTAATGTCATTGGTTCCATAACGACATTTTTTGCTTATAAAAATGATTTGATT
CAAAGTATTGGCTCTTGGTTGCAAGGTGATTTCTCTACCATTATTTCAGGACAATATGAGTTAATCTATTTAAGTGTTCC
ACTGATGATTATTGCCTACTTGTATGCTAATAAATTTACGATTGCAGGAATGGGAGAGGACTTTGCTACCAATCTAGGGT
TACCATTTAAGCAGGTTGTGAACATTGGGTTAGTCATCGTAGCACTTGTGTCATCTATCGTACTATTAACGGTTGGAATG
ATTCCTTTTTTAGGATTAATCATTCCGAATATTGTGTCAATATATGCTGGAGATCATTTGAAAAACAGTCTTCCGCAAAC
AGCTTTGCTTGGAGCGGTTTTTGTACTGATTTGTGATATTTTAGGACGAGTTATCATTTATCCATACGAGATTTCCATTG
GTATGATGGTTGGCGTCATTGGTAGTGGGATATTCTTGTACATGTTGATTAGGAGAAAGGCTTATGAGTAA

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522