Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LZP85_RS02445 Genome accession   NZ_CP090431
Coordinates   479436..481256 (+) Length   606 a.a.
NCBI ID   WP_076513372.1    Uniprot ID   -
Organism   Priestia flexa strain DMP08     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 474436..486256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP85_RS02425 (LZP85_02425) - 474731..475393 (-) 663 WP_119543106.1 TerC family protein -
  LZP85_RS02430 (LZP85_02430) mecA 475715..476398 (+) 684 WP_061785448.1 adaptor protein MecA -
  LZP85_RS02435 (LZP85_02435) cls 476479..477996 (+) 1518 WP_119543105.1 cardiolipin synthase -
  LZP85_RS02440 (LZP85_02440) - 478098..479285 (+) 1188 WP_226639616.1 competence protein CoiA -
  LZP85_RS02445 (LZP85_02445) pepF 479436..481256 (+) 1821 WP_076513372.1 oligoendopeptidase F Regulator
  LZP85_RS02450 (LZP85_02450) - 481297..481473 (-) 177 WP_090752849.1 hypothetical protein -
  LZP85_RS02455 (LZP85_02455) - 481729..482610 (-) 882 WP_319004681.1 ClpXP adapter SpxH family protein -
  LZP85_RS02460 (LZP85_02460) - 482607..483017 (-) 411 WP_061785625.1 globin -
  LZP85_RS02465 (LZP85_02465) - 483238..483882 (-) 645 WP_206833284.1 lytic transglycosylase domain-containing protein -
  LZP85_RS02470 (LZP85_02470) - 483887..484477 (-) 591 WP_076513368.1 CYTH domain-containing protein -
  LZP85_RS02475 (LZP85_02475) - 484781..485167 (+) 387 WP_025908134.1 hypothetical protein -
  LZP85_RS02480 (LZP85_02480) - 485187..485828 (+) 642 WP_025908133.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 70083.68 Da        Isoelectric Point: 4.6532

>NTDB_id=642354 LZP85_RS02445 WP_076513372.1 479436..481256(+) (pepF) [Priestia flexa strain DMP08]
MSEQSTVKKLPNRSEIKVEDTWRLEDIFETDEAWEKEFQAVKALVPEMEQYRGKLGESADTLFKALQQQDELTMRVSKLY
TYAHMRYDQDTTNSFYQGLNDRIKMLYTEIASALSYVTPELLAVDEETLKQYLKDSKDLQLYAHALDEVNRERPHILSES
EEAILAQASEALGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRYIRFLESSDRRVREEAFKAVYDTYGKFKNTFAST
LSGTVKKDNFSAKVRNYESARHAALSANNIPEEVYDNLVATVNEYLPLLQRYIDLRKKVLGVDELHMYDLYTPLVQDVKM
EIPYSEAKDYLLKGLAPLGEEYISILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKEQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHEIHVRAQ
NGEPLTPELLTKLYYDLNKKYFGDNLVIDEEIGLEWARIPHFYYNYYVYQYATGFSAAAALSKQILEEGDAAVERYLGFL
KAGSSDYPIEVLKRAGVDMTTAEPIKEALEVFKEKLEEMERLLEKN

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=642354 LZP85_RS02445 WP_076513372.1 479436..481256(+) (pepF) [Priestia flexa strain DMP08]
ATGAGTGAACAATCCACGGTGAAAAAGCTGCCAAATCGCAGTGAAATTAAAGTAGAAGATACATGGAGATTAGAAGATAT
TTTTGAAACGGATGAAGCGTGGGAGAAAGAATTTCAAGCTGTTAAAGCGTTAGTTCCGGAAATGGAACAATATCGCGGCA
AGCTTGGAGAATCAGCAGACACGCTTTTTAAAGCACTTCAGCAGCAAGATGAACTAACAATGCGGGTCAGCAAGCTTTAT
ACATATGCACATATGAGGTATGACCAAGATACAACGAACTCATTCTATCAAGGATTAAATGATCGAATTAAAATGTTGTA
TACAGAAATTGCGAGTGCGTTATCTTACGTCACGCCTGAACTATTAGCAGTAGATGAGGAAACGCTAAAACAATATTTAA
AAGATAGCAAGGATTTACAGCTATATGCACATGCGCTGGATGAAGTGAATCGTGAGCGTCCTCATATCCTTTCTGAGAGT
GAAGAAGCTATTCTAGCACAGGCATCTGAAGCGCTAGGAGCATCAAGTAATACGTTCGGTATGCTGAATAATGCTGATTT
AGAGTTTCCATCCATTAAAGATGAAAACGGGGAAGAAGTGGAGATTACCCACGGTCGTTATATTCGGTTTTTAGAAAGCA
GTGATCGACGCGTTAGAGAAGAAGCGTTTAAAGCCGTCTATGATACGTATGGAAAGTTTAAAAATACATTTGCGAGTACT
CTTAGCGGAACGGTTAAAAAAGATAACTTTAGCGCTAAGGTCCGTAACTACGAATCAGCTCGCCATGCAGCTCTAAGCGC
AAACAATATTCCAGAAGAGGTATATGATAATTTAGTTGCAACGGTAAACGAATATCTGCCTCTATTACAGCGCTATATTG
ACCTACGAAAGAAAGTGTTAGGTGTTGATGAGCTTCACATGTATGATCTGTATACACCGCTTGTGCAAGACGTCAAAATG
GAAATACCATATAGCGAAGCAAAAGATTATTTATTAAAAGGTTTGGCGCCGCTTGGAGAAGAGTACATTTCCATTTTAAA
AGAAGGATTTGAAAACCGCTGGGTTGATGTGCACGAAAACAAAGGAAAGCGAAGCGGTGCTTATTCTTCTGGAACATATG
GAACAAATCCATATATTTTAATGAACTGGCAGGACAATGTGAACAATCTTTTCACATTAGCTCATGAGTTTGGTCACTCA
GTGCACAGTTACTATACGCGTAAAGAACAGCCTTACCCATACGGTGATTATTCAATCTTTGTCGCTGAAGTCGCATCTAC
GTGTAACGAAGCCCTATTAAATGATTATTTATTGAAAACAATCGACGATGAAAAGAAACGATTATACTTATTAAATCATT
ATTTAGAAGGCTTCCGCGGTACCGTGTTCCGTCAAACGATGTTTGCTGAATTTGAGCATGAAATTCACGTTCGGGCTCAA
AATGGTGAACCGCTAACACCAGAGCTGCTAACAAAGTTATACTATGATTTAAATAAAAAGTACTTTGGTGATAATTTAGT
CATTGATGAAGAGATTGGCTTAGAGTGGGCAAGAATTCCACATTTCTACTATAATTATTATGTGTATCAATACGCAACAG
GCTTCAGCGCAGCTGCAGCGCTAAGTAAGCAAATTCTTGAAGAAGGAGACGCGGCTGTTGAGCGTTACCTTGGCTTCTTA
AAAGCTGGAAGCTCTGATTATCCAATCGAAGTGCTAAAACGCGCAGGAGTGGATATGACAACTGCTGAACCAATCAAAGA
AGCATTAGAAGTGTTTAAAGAAAAGCTTGAAGAGATGGAACGTTTGTTAGAGAAAAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.327

98.02

0.484