Detailed information NTG0642338

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM32_RS07405
• Genome accession: NZ_CP107188
• Coordinates: 1521624..1522616 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain R2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1516624..1527616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM32_RS07385 (OGM32_07375)	ygbM	1517262..1518038 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM32_RS07390 (OGM32_07380)	ygbN	1518127..1519491 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM32_RS07395 (OGM32_07385)	-	1519634..1520677 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM32_RS07400 (OGM32_07390)	-	1520902..1521453 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM32_RS07405 (OGM32_07395)	rpoS	1521624..1522616 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM32_RS07410 (OGM32_07400)	nlpD	1522679..1523773 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM32_RS07415 (OGM32_07405)	pcm	1523958..1524584 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM32_RS07420 (OGM32_07410)	surE	1524578..1525339 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM32_RS07425 (OGM32_07415)	truD	1525320..1526369 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM32_RS07430 (OGM32_07420)	ispF	1526366..1526845 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM32_RS07435 (OGM32_07425)	ispD	1526845..1527555 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=642338 OGM32_RS07405 WP_000081550.1 1521624..1522616(-) (rpoS) [Escherichia coli strain R2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=642338 OGM32_RS07405 WP_000081550.1 1521624..1522616(-) (rpoS) [Escherichia coli strain R2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715