Detailed information NTG0064230

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: U722_RS17405
• Genome accession: NC_023073
• Coordinates: 3617493..3618638 (+)
• Length: 381 a.a.
• NCBI ID: WP_024085922.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens LFB112
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3612493..3623638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U722_RS17385 (U722_18490)	-	3612968..3613684 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
U722_RS17390 (U722_18495)	narK	3613782..3614972 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
U722_RS17395 (U722_18500)	argS	3615106..3616776 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
U722_RS17400 (U722_18505)	-	3616773..3617201 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
U722_RS17405 (U722_18515)	rapF	3617493..3618638 (+)	1146	WP_024085922.1	Rap family tetratricopeptide repeat protein	Regulator
U722_RS19915	-	3618622..3618741 (+)	120	WP_131242041.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
U722_RS17410 (U722_18520)	speB	3618864..3619736 (-)	873	WP_003151054.1	agmatinase	-
U722_RS17415 (U722_18525)	speE	3619796..3620626 (-)	831	WP_003151052.1	spermidine synthase	-
U722_RS17420 (U722_18530)	-	3620826..3622898 (+)	2073	WP_003151050.1	transglycosylase domain-containing protein	-
U722_RS17425 (U722_18535)	-	3622922..3623353 (-)	432	WP_003151048.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45768.27 Da
• Isoelectric Point: 5.0694

>NTDB_id=64230 U722_RS17405 WP_024085922.1 3617493..3618638(+) (rapF) [Bacillus amyloliquefaciens LFB112]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=64230 U722_RS17405 WP_024085922.1 3617493..3618638(+) (rapF) [Bacillus amyloliquefaciens LFB112]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTACGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACGCAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533