Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LZ603_RS19640 Genome accession   NZ_CP090421
Coordinates   3940800..3941234 (-) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus cereus strain NR1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3935800..3946234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ603_RS19625 - 3936976..3937533 (+) 558 WP_000062061.1 PadR family transcriptional regulator -
  LZ603_RS19630 metE 3938047..3940335 (+) 2289 WP_001007608.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  LZ603_RS19635 comJ 3940374..3940763 (-) 390 WP_000424030.1 competence protein ComJ -
  LZ603_RS19640 nucA/comI 3940800..3941234 (-) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  LZ603_RS19645 - 3941461..3942210 (+) 750 WP_000388471.1 DUF3967 domain-containing protein -
  LZ603_RS19650 kinB 3942249..3943523 (-) 1275 WP_000420370.1 sporulation sensor histidine kinase KinB -
  LZ603_RS19655 - 3943834..3944034 (+) 201 WP_000929280.1 hypothetical protein -
  LZ603_RS19660 - 3944157..3945320 (+) 1164 WP_000434578.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=642262 LZ603_RS19640 WP_000811494.1 3940800..3941234(-) (nucA/comI) [Bacillus cereus strain NR1]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=642262 LZ603_RS19640 WP_000811494.1 3940800..3941234(-) (nucA/comI) [Bacillus cereus strain NR1]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCAGCGGATAACCGCGGAGCAGGTTCTTGGGTAGGGAATAAGTTAGATAAATACC
CAGATGGTACGCGAGTAAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549