Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LZ603_RS09615 Genome accession   NZ_CP090421
Coordinates   1886849..1887136 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain NR1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1881849..1892136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ603_RS09595 - 1883023..1883220 (+) 198 WP_001048090.1 DUF4083 domain-containing protein -
  LZ603_RS09600 - 1883252..1883713 (+) 462 WP_000024999.1 NUDIX hydrolase -
  LZ603_RS09605 nadE 1883763..1884581 (-) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  LZ603_RS09610 - 1884852..1886732 (+) 1881 WP_001025997.1 FtsX-like permease family protein -
  LZ603_RS09615 abrB 1886849..1887136 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LZ603_RS09620 - 1887412..1888359 (+) 948 WP_048519026.1 serine protease -
  LZ603_RS09625 - 1888401..1888748 (+) 348 Protein_1815 MFS transporter -
  LZ603_RS27560 - 1888797..1889003 (+) 207 WP_001100443.1 hypothetical protein -
  LZ603_RS09630 - 1889147..1889509 (+) 363 WP_001198796.1 DUF805 domain-containing protein -
  LZ603_RS09635 - 1889709..1889933 (-) 225 WP_000162602.1 hypothetical protein -
  LZ603_RS09640 - 1890018..1890365 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  LZ603_RS09645 - 1890562..1891089 (+) 528 WP_000687342.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=642254 LZ603_RS09615 WP_000648324.1 1886849..1887136(+) (abrB) [Bacillus cereus strain NR1]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=642254 LZ603_RS09615 WP_000648324.1 1886849..1887136(+) (abrB) [Bacillus cereus strain NR1]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526