Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LZ603_RS06415 Genome accession   NZ_CP090421
Coordinates   1262140..1262463 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain NR1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1257140..1267463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ603_RS06390 - 1257416..1258702 (+) 1287 WP_000247031.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LZ603_RS06395 - 1258893..1259462 (+) 570 WP_000767795.1 signal peptidase I -
  LZ603_RS06400 - 1259523..1260110 (+) 588 WP_000172852.1 CalY family protein -
  LZ603_RS06405 - 1260245..1261087 (+) 843 WP_000919953.1 DUF4047 domain-containing protein -
  LZ603_RS06410 calY 1261474..1262067 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  LZ603_RS06415 sinR 1262140..1262463 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  LZ603_RS06420 - 1262543..1262677 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  LZ603_RS06425 inhA1 1263020..1265410 (+) 2391 WP_001035936.1 M6 family metalloprotease immune inhibitor InhA1 -
  LZ603_RS06430 - 1265582..1266949 (+) 1368 WP_000028375.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=642251 LZ603_RS06415 WP_000578885.1 1262140..1262463(-) (sinR) [Bacillus cereus strain NR1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=642251 LZ603_RS06415 WP_000578885.1 1262140..1262463(-) (sinR) [Bacillus cereus strain NR1]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692