Detailed information NTG0642199

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM34_RS19680
• Genome accession: NZ_CP107182
• Coordinates: 3927791..3928783 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain R4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3922791..3933783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM34_RS19660 (OGM34_19645)	ygbM	3923429..3924205 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM34_RS19665 (OGM34_19650)	ygbN	3924294..3925658 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM34_RS19670 (OGM34_19655)	-	3925801..3926844 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM34_RS19675 (OGM34_19660)	-	3927069..3927620 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM34_RS19680 (OGM34_19665)	rpoS	3927791..3928783 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM34_RS19685 (OGM34_19670)	nlpD	3928846..3929940 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM34_RS19690 (OGM34_19675)	pcm	3930125..3930751 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM34_RS19695 (OGM34_19680)	surE	3930745..3931506 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM34_RS19700 (OGM34_19685)	truD	3931487..3932536 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM34_RS19705 (OGM34_19690)	ispF	3932533..3933012 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM34_RS19710 (OGM34_19695)	ispD	3933012..3933722 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=642199 OGM34_RS19680 WP_000081550.1 3927791..3928783(-) (rpoS) [Escherichia coli strain R4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=642199 OGM34_RS19680 WP_000081550.1 3927791..3928783(-) (rpoS) [Escherichia coli strain R4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715