Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LZF92_RS06740 Genome accession   NZ_CP090411
Coordinates   1297009..1298382 (-) Length   457 a.a.
NCBI ID   WP_014568594.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain 2102-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292009..1303382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZF92_RS06720 (LZF92_06720) - 1292289..1292696 (-) 408 WP_003700685.1 Mini-ribonuclease 3 -
  LZF92_RS06725 (LZF92_06725) cysS 1292689..1294101 (-) 1413 WP_014568593.1 cysteine--tRNA ligase -
  LZF92_RS06730 (LZF92_06730) gltX 1294253..1295740 (-) 1488 WP_234057733.1 glutamate--tRNA ligase -
  LZF92_RS06735 (LZF92_06735) - 1295871..1296983 (-) 1113 WP_003700688.1 PIN/TRAM domain-containing protein -
  LZF92_RS06740 (LZF92_06740) radA 1297009..1298382 (-) 1374 WP_014568594.1 DNA repair protein RadA Machinery gene
  LZF92_RS06745 (LZF92_06745) - 1298400..1298936 (-) 537 WP_014568595.1 hypothetical protein -
  LZF92_RS06750 (LZF92_06750) - 1299092..1299370 (+) 279 WP_003702618.1 GNAT family N-acetyltransferase -
  LZF92_RS06755 (LZF92_06755) - 1299459..1300793 (+) 1335 WP_234057734.1 aminopeptidase C -
  LZF92_RS06760 (LZF92_06760) - 1301004..1301357 (+) 354 WP_003710547.1 bacteriocin immunity protein -
  LZF92_RS06765 (LZF92_06765) - 1301524..1302198 (-) 675 WP_081539050.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  LZF92_RS06770 (LZF92_06770) - 1302220..1303164 (-) 945 WP_014568598.1 AEC family transporter -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49708.34 Da        Isoelectric Point: 8.0254

>NTDB_id=642179 LZF92_RS06740 WP_014568594.1 1297009..1298382(-) (radA) [Ligilactobacillus salivarius strain 2102-15]
MAKTKTRYVCQNCEYISPRYLGRCPNCGSWNSLVEEIEKKESSTKAQPRVSISGTTVKPKLIDDVSTVETPRFKTNLEEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSTLGKKVLYVSGEESATQIKLRADRLGVHGTELYLYPETDMDSIR
KNIELLKPDFVVIDSVQTMQEPEMTAAVGSVSQIREVTGDLMQIAKTNGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDQHRTFRILRAVKNRFGSTNEIGIFEMKNGGLSEVANPSEIFLEERLKGATGSAVVASLEGTRPILVELQALVTPTAF
GNAKRTTTGLDHNRVALLMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDAETRPTDCFIGEVGLT
GEIRRVNRIEQRVVEAAKLGFKRVFLPKNNLDGWMPPKDIEVVGVSTLNQALKLIFS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=642179 LZF92_RS06740 WP_014568594.1 1297009..1298382(-) (radA) [Ligilactobacillus salivarius strain 2102-15]
TTGGCGAAAACTAAGACAAGATATGTTTGTCAAAATTGTGAATATATCTCTCCACGTTATTTAGGACGCTGCCCTAATTG
TGGTTCCTGGAATAGCTTGGTAGAGGAAATAGAGAAAAAGGAAAGTTCAACTAAAGCACAACCTAGAGTTAGTATCTCTG
GTACAACAGTGAAACCTAAATTAATTGATGATGTTTCTACTGTGGAAACCCCAAGATTTAAAACAAACTTAGAAGAATTG
AATCGTGTTTTGGGTGGCGGAATTGTTCCAGGATCTTTAGTGTTAATTGGTGGAGATCCAGGTATTGGTAAGTCTACGTT
ATTACTACAAGTTTCTGGGCAATTATCTACTCTCGGGAAAAAGGTTCTTTATGTTTCTGGAGAAGAGAGTGCAACTCAAA
TTAAATTACGTGCGGATCGTTTAGGAGTTCATGGAACTGAGCTATATTTATATCCTGAAACAGATATGGATAGTATTAGA
AAAAATATTGAACTTTTAAAGCCTGATTTTGTTGTAATTGATTCGGTGCAGACAATGCAGGAGCCAGAAATGACAGCTGC
AGTTGGAAGTGTTTCTCAAATTAGGGAAGTAACTGGAGATTTGATGCAAATTGCGAAAACTAATGGGATAACTGTCTTTG
TTGTAGGACATGTTACTAAAGGGGGAGCAATTGCAGGACCTAAAATTTTAGAACACATGGTAGATACTGTTCTTTATTTT
GAGGGAGATCAACATAGAACATTTAGAATTTTACGAGCTGTTAAAAATAGATTTGGTTCAACTAATGAAATTGGAATTTT
TGAAATGAAAAATGGAGGATTAAGTGAAGTTGCTAATCCGTCAGAGATTTTTCTAGAAGAAAGATTAAAAGGAGCTACGG
GATCAGCTGTCGTTGCTTCGCTTGAAGGAACTAGGCCTATATTGGTAGAATTACAAGCACTAGTAACGCCTACTGCATTT
GGAAATGCTAAGAGAACAACAACTGGTTTAGATCATAATCGAGTTGCGTTACTGATGGCGGTACTTGAAAAAAGAGCTGG
TTTGTTATTACAAAATCAGGATGCTTATTTGAAAGCTGCTGGTGGAGTGAAGTTAGATGAGCCAGCAATAGACTTAGCCA
TTGCTGTTAGCTTAGTTTCTAGTTATCGCGATGCAGAAACAAGACCAACTGACTGTTTTATAGGAGAAGTAGGATTGACT
GGTGAAATAAGACGAGTTAATCGTATCGAACAGCGTGTTGTAGAGGCTGCTAAATTAGGATTTAAGCGAGTATTTTTACC
AAAAAATAACTTAGATGGTTGGATGCCTCCAAAAGATATTGAGGTAGTAGGCGTAAGTACACTAAATCAAGCATTAAAAC
TAATTTTTAGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.271

100

0.683
  radA Streptococcus mitis SK321

68.053

100

0.681
  radA Streptococcus pneumoniae Rx1

68.053

100

0.681
  radA Streptococcus pneumoniae D39

68.053

100

0.681
  radA Streptococcus pneumoniae R6

68.053

100

0.681
  radA Streptococcus pneumoniae TIGR4

68.053

100

0.681
  radA Bacillus subtilis subsp. subtilis str. 168

65.563

99.125

0.65