Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LZF92_RS02160 Genome accession   NZ_CP090411
Coordinates   438354..440171 (+) Length   605 a.a.
NCBI ID   WP_014568209.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain 2102-15     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 433354..445171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZF92_RS02145 (LZF92_02145) - 434797..436443 (+) 1647 WP_014568206.1 phosphoenolpyruvate carboxykinase (ATP) -
  LZF92_RS02150 (LZF92_02150) - 436547..437308 (+) 762 WP_014568207.1 adaptor protein MecA -
  LZF92_RS02155 (LZF92_02155) - 437357..438256 (+) 900 WP_014568208.1 competence protein CoiA -
  LZF92_RS02160 (LZF92_02160) pepF 438354..440171 (+) 1818 WP_014568209.1 oligoendopeptidase F Regulator
  LZF92_RS02165 (LZF92_02165) - 440261..440857 (-) 597 WP_162853479.1 ClpXP adapter SpxH family protein -
  LZF92_RS02170 (LZF92_02170) - 441034..441888 (+) 855 WP_014568210.1 phosphate ABC transporter substrate-binding protein PstS family protein -
  LZF92_RS02175 (LZF92_02175) pstC 441899..442816 (+) 918 WP_003702917.1 phosphate ABC transporter permease subunit PstC -
  LZF92_RS02180 (LZF92_02180) pstA 442816..443706 (+) 891 WP_014568211.1 phosphate ABC transporter permease PstA -
  LZF92_RS02185 (LZF92_02185) pstB 443711..444505 (+) 795 WP_003702915.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70529.69 Da        Isoelectric Point: 5.5454

>NTDB_id=642164 LZF92_RS02160 WP_014568209.1 438354..440171(+) (pepF) [Ligilactobacillus salivarius strain 2102-15]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQAVKDEVQNFRKLQGTMDQGSQRFLQIIENFLSINRKFEKVYV
YASMKNDQDTTNAKYQGYNEMVDALAAEFSESISWFEPELLELDEDKLKQYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLKFPIVKDDNGDDIQLSHGVYGKLIESTNRKVRKAAFKGLYSVYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNHIPTEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEVLGMDYLTHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILTDYLLKNNDEKEILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNSK
GVPLTAKSISEYYLELNKKYYGNDVVSDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDENKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTDSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=642164 LZF92_RS02160 WP_014568209.1 438354..440171(+) (pepF) [Ligilactobacillus salivarius strain 2102-15]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTAACGTGGGATTTAACAAAAGTATT
TAAAAGTGATGAAGAGTTTGAAAAGGAGTACCAAGCTGTAAAAGATGAAGTACAGAACTTCAGAAAATTACAAGGTACAA
TGGATCAAGGTAGTCAAAGATTTTTACAAATCATTGAAAATTTCTTAAGTATTAATAGGAAATTTGAAAAAGTTTATGTA
TATGCAAGTATGAAAAATGATCAAGATACTACAAACGCTAAGTATCAAGGATATAATGAAATGGTTGATGCATTAGCTGC
TGAATTTTCAGAATCTATATCCTGGTTCGAACCTGAGTTACTAGAATTAGATGAAGATAAATTAAAGCAATATTTTGTAG
AAAAAAAAGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAGCATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGGACATCGCAAAATGTTTTTGGCATTTTAAACAACGCAGATCTAAA
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATGGTGTTTATGGAAAATTAATAGAATCTACAA
ATAGGAAAGTTAGAAAAGCTGCATTCAAGGGATTATACAGTGTTTATGACCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTGCATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
TCATATTCCAACAGAAGTCTATGATGTATTACTGGAACAAGTACACAAAAATCTTCCATTATTACATCGCTATGTAAAGC
TTAGAAAGAAAATATTAGGTGTCGATGAACTCCATATGTATGATATGTATACACCGTTAACTGAAGATAGTAAGCTTACT
TATAATTATATTCAAGCGCAAATTGAAGCAAAAAAGGCACTTGAAGTATTGGGAATGGATTATTTAACGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGTGGAGCATATTCATCAGGAGTTTATGATA
CTCCGCCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACCTTGGTACATGAGATGGGACATAGTATG
CATAGTTATTACACTAGTCATAATCAACCCTATCAGTATGGAGATTACCCAATATTTTTGGCAGAAATAGCTTCAACTAC
TAATGAAAATATTTTGACGGATTATCTATTAAAGAATAACGATGAAAAAGAGATATTAATCTATATTTTAAATCATTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAGAATTCAAAA
GGAGTACCACTAACTGCTAAATCAATTTCTGAATATTACTTAGAATTAAATAAGAAATATTATGGCAATGATGTAGTAAG
CGATCCTGAGATAGCTTTAGAGTGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCAGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGCGATGAAAATAAATTAAACAAATATTTAACTTACTTAAAA
GCTGGTAGTAGTAAATATCCATTGGAAGTCATGAAAGATGCAGGTGTGGATATGACAGATTCTTCATATTTGGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAGACATTATTGTCAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.378

97.851

0.522