Detailed information NTG0642147

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OGM34_RS00280
• Genome accession: NZ_CP107182
• Coordinates: 46726..47751 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain R4
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 41726..52751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM34_RS00250 (OGM34_00250)	zapB	41810..42055 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
OGM34_RS00255 (OGM34_00255)	rraA	42140..42625 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OGM34_RS00260 (OGM34_00260)	menA	42718..43644 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OGM34_RS00265 (OGM34_00265)	hslU	43711..45042 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
OGM34_RS00270 (OGM34_00270)	hslV	45052..45582 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OGM34_RS00275 (OGM34_00275)	ftsN	45675..46634 (-)	960	WP_000068834.1	cell division protein FtsN	-
OGM34_RS00280 (OGM34_00280)	cytR	46726..47751 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
OGM34_RS00285 (OGM34_00285)	priA	47907..50105 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
OGM34_RS00290 (OGM34_00290)	rpmE	50308..50520 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
OGM34_RS00295 (OGM34_00295)	yiiX	50581..51189 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
OGM34_RS00300 (OGM34_00300)	metJ	51249..51566 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=642147 OGM34_RS00280 WP_000644908.1 46726..47751(-) (cytR) [Escherichia coli strain R4]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=642147 OGM34_RS00280 WP_000644908.1 46726..47751(-) (cytR) [Escherichia coli strain R4]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625