Detailed information NTG0642116

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OGM35_RS15385
• Genome accession: NZ_CP107178
• Coordinates: 3101599..3102624 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain R6
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3096599..3107624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM35_RS15355 (OGM35_15330)	zapB	3096683..3096928 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
OGM35_RS15360 (OGM35_15335)	rraA	3097013..3097498 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OGM35_RS15365 (OGM35_15340)	menA	3097591..3098517 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OGM35_RS15370 (OGM35_15345)	hslU	3098584..3099915 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
OGM35_RS15375 (OGM35_15350)	hslV	3099925..3100455 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OGM35_RS15380 (OGM35_15355)	ftsN	3100548..3101507 (-)	960	WP_000068834.1	cell division protein FtsN	-
OGM35_RS15385 (OGM35_15360)	cytR	3101599..3102624 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
OGM35_RS15390 (OGM35_15365)	priA	3102780..3104978 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
OGM35_RS15395 (OGM35_15370)	rpmE	3105181..3105393 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
OGM35_RS15400 (OGM35_15375)	yiiX	3105454..3106062 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
OGM35_RS15405 (OGM35_15380)	metJ	3106122..3106439 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=642116 OGM35_RS15385 WP_000644908.1 3101599..3102624(-) (cytR) [Escherichia coli strain R6]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=642116 OGM35_RS15385 WP_000644908.1 3101599..3102624(-) (cytR) [Escherichia coli strain R6]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625