Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   LZ183_RS00450 Genome accession   NZ_CP090407
Coordinates   97146..98495 (-) Length   449 a.a.
NCBI ID   WP_031797628.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD4SA159-1     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92146..103495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ183_RS00425 (LZ183_00425) - 92183..92695 (-) 513 WP_113587724.1 DUF1643 domain-containing protein -
  LZ183_RS00430 (LZ183_00430) - 92711..93022 (-) 312 WP_113587726.1 DUF960 family protein -
  LZ183_RS00435 (LZ183_00435) - 93118..93456 (-) 339 WP_113587728.1 SAUGI family uracil-DNA glycosylase inhibitor -
  LZ183_RS00440 (LZ183_00440) - 94026..94955 (-) 930 WP_002506256.1 2-dehydropantoate 2-reductase -
  LZ183_RS00445 (LZ183_00445) ccrB 95496..97124 (-) 1629 WP_031869225.1 recombinase family protein Machinery gene
  LZ183_RS00450 (LZ183_00450) ccrA 97146..98495 (-) 1350 WP_031797628.1 recombinase family protein Machinery gene
  LZ183_RS00455 (LZ183_00455) - 98689..98967 (-) 279 WP_031797629.1 hypothetical protein -
  LZ183_RS00460 (LZ183_00460) - 99046..99363 (-) 318 WP_031797630.1 hypothetical protein -
  LZ183_RS00465 (LZ183_00465) - 99430..101175 (-) 1746 WP_224742988.1 DUF927 domain-containing protein -
  LZ183_RS00470 (LZ183_00470) - 101223..101513 (-) 291 WP_113587732.1 DUF1413 domain-containing protein -
  LZ183_RS00475 (LZ183_00475) - 101695..102639 (-) 945 WP_233266064.1 hypothetical protein -
  LZ183_RS00480 (LZ183_00480) - 102880..103329 (+) 450 WP_257238263.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52553.34 Da        Isoelectric Point: 10.2599

>NTDB_id=642098 LZ183_RS00450 WP_031797628.1 97146..98495(-) (ccrA) [Staphylococcus aureus strain GD4SA159-1]
MNQAIGYLRQSTTKQQSLAAQKQTIESLAQKHQIKHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKHHVHILSVHDGYFDMDKSFDRLKLNIFISLAELESDNIGEQVKNGLKEKANQGKLITTHAPFGYRYH
NGTFTINTSEAHTVKAVFNYYLQGYGYKKISQRLETDSRMINRMPYQVRNIIINPNYCGRVINQYGQHDNMFPAIVSTTI
YEEAQAMRKQKQVERKPSKNRLKQKIKCPYCHSTLTNVTIRKPNRSLRYYVCSQNMNNARFVCNFKGINAQELEKQVLDI
CKEFFQNKQFHQKINSRIRQQLKQHQQLESQNNITQAQLIDKLAQGLIDAEAFKKQSQSITQNRKPLRSISEDQLQVSLQ
NVFQKSFTLNMLYPYIDEIHITKNKKLVGIYFKNEPLNIVKQQMQSSIV

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=642098 LZ183_RS00450 WP_031797628.1 97146..98495(-) (ccrA) [Staphylococcus aureus strain GD4SA159-1]
ATGAATCAAGCTATTGGCTACTTACGTCAAAGTACAACCAAACAACAATCACTTGCAGCACAGAAACAAACCATTGAATC
ATTAGCCCAAAAACATCAGATCAAACACATTACATTCTATAGCGATAAACAATCTGGACGCACTGACAAGCGTAATGGTT
ACCAACAAATTACTGAACTAATTCAACAAGGACAATGTGACGTTTTATGTTGTTATCGTCTGAATCGACTACATCGAAAT
CTAAAAAATGCTTTAAAACTTATGAAACTATGCCAAAAGCATCATGTTCACATATTAAGTGTACATGACGGATATTTCGA
CATGGATAAATCTTTTGATCGTCTCAAACTAAATATTTTCATCAGTTTGGCCGAACTTGAATCCGATAATATTGGTGAAC
AAGTCAAAAACGGCCTCAAGGAAAAAGCGAATCAAGGCAAACTGATTACGACACATGCACCCTTTGGCTATCGTTATCAT
AATGGCACATTCACGATAAACACATCCGAAGCACATACTGTGAAAGCTGTATTCAACTACTATCTTCAGGGTTATGGATA
CAAAAAGATTTCACAACGCTTAGAAACCGACTCAAGAATGATAAATCGAATGCCCTATCAAGTTCGTAATATTATCATTA
ACCCTAATTACTGTGGACGAGTTATTAATCAGTATGGACAACATGACAACATGTTCCCAGCTATTGTCAGTACAACGATA
TATGAAGAAGCACAAGCTATGAGAAAGCAGAAACAAGTCGAACGTAAACCTTCAAAAAATCGACTCAAACAAAAGATCAA
ATGTCCCTATTGTCATTCAACACTTACAAATGTAACCATACGAAAACCAAATCGTTCATTGCGTTACTATGTCTGCTCAC
AGAATATGAATAACGCTCGCTTTGTTTGTAACTTCAAGGGAATAAATGCGCAAGAATTAGAAAAACAAGTCTTAGACATA
TGCAAAGAATTCTTTCAAAACAAACAATTCCATCAAAAGATAAATAGCAGAATCAGACAACAACTCAAACAACATCAACA
GTTAGAATCACAAAATAATATTACCCAAGCACAACTAATAGATAAATTGGCCCAGGGCTTAATTGATGCTGAAGCATTCA
AAAAACAGTCTCAATCAATAACTCAAAATCGTAAACCTCTACGCTCAATAAGCGAGGATCAATTACAAGTATCGCTACAA
AATGTATTTCAGAAAAGTTTCACGTTAAACATGCTGTATCCATACATCGATGAAATTCATATTACTAAAAATAAAAAGCT
AGTTGGTATCTATTTCAAAAATGAGCCATTGAATATTGTAAAACAACAGATGCAATCATCAATTGTCTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-320)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

77.506

100

0.775
  ccrA Staphylococcus aureus N315

69.933

100

0.699