Detailed information NTG0642083

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM35_RS08570
• Genome accession: NZ_CP107178
• Coordinates: 1690735..1691727 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain R6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1685735..1696727

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM35_RS08550 (OGM35_08535)	ygbM	1686373..1687149 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM35_RS08555 (OGM35_08540)	ygbN	1687238..1688602 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM35_RS08560 (OGM35_08545)	-	1688745..1689788 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM35_RS08565 (OGM35_08550)	-	1690013..1690564 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM35_RS08570 (OGM35_08555)	rpoS	1690735..1691727 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM35_RS08575 (OGM35_08560)	nlpD	1691790..1692884 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM35_RS08580 (OGM35_08565)	pcm	1693069..1693695 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM35_RS08585 (OGM35_08570)	surE	1693689..1694450 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM35_RS08590 (OGM35_08575)	truD	1694431..1695480 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM35_RS08595 (OGM35_08580)	ispF	1695477..1695956 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM35_RS08600 (OGM35_08585)	ispD	1695956..1696666 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=642083 OGM35_RS08570 WP_000081550.1 1690735..1691727(-) (rpoS) [Escherichia coli strain R6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=642083 OGM35_RS08570 WP_000081550.1 1690735..1691727(-) (rpoS) [Escherichia coli strain R6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715