Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   U722_RS12005 Genome accession   NC_023073
Coordinates   2555112..2555879 (-) Length   255 a.a.
NCBI ID   WP_024085618.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2550112..2560879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS11985 (U722_12780) - 2550314..2551126 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  U722_RS11990 (U722_12785) ccpN 2551152..2551790 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  U722_RS11995 (U722_12790) glyS 2551891..2553930 (-) 2040 WP_024085617.1 glycine--tRNA ligase subunit beta -
  U722_RS12000 (U722_12795) glyQ 2553923..2554810 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  U722_RS12005 (U722_12800) recO 2555112..2555879 (-) 768 WP_024085618.1 DNA repair protein RecO Machinery gene
  U722_RS19475 (U722_12805) - 2555916..2556059 (-) 144 WP_007408286.1 YqzL family protein -
  U722_RS12010 (U722_12810) era 2556215..2557120 (-) 906 WP_003152978.1 GTPase Era -
  U722_RS12015 (U722_12815) - 2557101..2557511 (-) 411 WP_003152976.1 cytidine deaminase -
  U722_RS12020 (U722_12820) - 2557635..2558009 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  U722_RS12025 (U722_12825) ybeY 2557990..2558463 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  U722_RS12030 (U722_12830) - 2558464..2560596 (-) 2133 WP_003152972.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29232.80 Da        Isoelectric Point: 8.3099

>NTDB_id=64206 U722_RS12005 WP_024085618.1 2555112..2555879(-) (recO) [Bacillus amyloliquefaciens LFB112]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVVARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=64206 U722_RS12005 WP_024085618.1 2555112..2555879(-) (recO) [Bacillus amyloliquefaciens LFB112]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCGTGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment