Detailed information NTG0642002

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OGM36_RS07885
• Genome accession: NZ_CP107174
• Coordinates: 1646096..1647121 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain R7
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1641096..1652121

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM36_RS07865 (OGM36_07860)	metJ	1642281..1642598 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
OGM36_RS07870 (OGM36_07865)	yiiX	1642658..1643266 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
OGM36_RS07875 (OGM36_07870)	rpmE	1643327..1643539 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
OGM36_RS07880 (OGM36_07875)	priA	1643742..1645940 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
OGM36_RS07885 (OGM36_07880)	cytR	1646096..1647121 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
OGM36_RS07890 (OGM36_07885)	ftsN	1647213..1648172 (+)	960	WP_000068834.1	cell division protein FtsN	-
OGM36_RS07895 (OGM36_07890)	hslV	1648265..1648795 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OGM36_RS07900 (OGM36_07895)	hslU	1648805..1650136 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
OGM36_RS07905 (OGM36_07900)	menA	1650203..1651129 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OGM36_RS07910 (OGM36_07905)	rraA	1651222..1651707 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OGM36_RS07915 (OGM36_07910)	zapB	1651792..1652037 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=642002 OGM36_RS07885 WP_000644908.1 1646096..1647121(+) (cytR) [Escherichia coli strain R7]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=642002 OGM36_RS07885 WP_000644908.1 1646096..1647121(+) (cytR) [Escherichia coli strain R7]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625