Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LZC40_RS16810 Genome accession   NZ_CP090389
Coordinates   3371542..3372138 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain YZH22127     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3366542..3377138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZC40_RS16795 helD 3366750..3368804 (-) 2055 WP_004176653.1 DNA helicase IV -
  LZC40_RS16800 - 3368929..3369375 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LZC40_RS16805 yccS 3369393..3371528 (+) 2136 WP_002898422.1 YccS family putative transporter -
  LZC40_RS16810 sxy/tfoX 3371542..3372138 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LZC40_RS16815 sulA 3372487..3372996 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  LZC40_RS16820 ompA 3373349..3374419 (+) 1071 WP_002898408.1 porin OmpA -
  LZC40_RS16825 matP 3374551..3375003 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LZC40_RS16830 - 3375189..3376946 (+) 1758 WP_004191101.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=641964 LZC40_RS16810 WP_004179217.1 3371542..3372138(-) (sxy/tfoX) [Klebsiella pneumoniae strain YZH22127]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=641964 LZC40_RS16810 WP_004179217.1 3371542..3372138(-) (sxy/tfoX) [Klebsiella pneumoniae strain YZH22127]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51