Detailed information NTG0641939

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LY388_RS17100
• Genome accession: NZ_CP090387
• Coordinates: 2592197..2593204 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain GXFL1-4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2587197..2598204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LY388_RS17090 (LY388_17090)	cysM	2588360..2589247 (+)	888	WP_057563333.1	cysteine synthase CysM	-
LY388_RS17095 (LY388_17095)	mutS	2589515..2592103 (+)	2589	WP_148504815.1	DNA mismatch repair protein MutS	-
LY388_RS17100 (LY388_17100)	rpoS	2592197..2593204 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
LY388_RS17105 (LY388_17105)	nlpD	2593278..2594213 (-)	936	WP_000171040.1	murein hydrolase activator NlpD	-
LY388_RS17110 (LY388_17110)	-	2594213..2594839 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LY388_RS17115 (LY388_17115)	surE	2594832..2595584 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
LY388_RS17120 (LY388_17120)	truD	2595586..2596671 (-)	1086	WP_234116089.1	tRNA pseudouridine(13) synthase TruD	-
LY388_RS17125 (LY388_17125)	ispF	2596701..2597177 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LY388_RS17130 (LY388_17130)	ispD	2597174..2597872 (-)	699	WP_001061966.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LY388_RS17135 (LY388_17135)	ftsB	2597869..2598153 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=641939 LY388_RS17100 WP_000116735.1 2592197..2593204(-) (rpoS) [Vibrio cholerae strain GXFL1-4]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=641939 LY388_RS17100 WP_000116735.1 2592197..2593204(-) (rpoS) [Vibrio cholerae strain GXFL1-4]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCTATCCATGTCGTCAAAGAGCTGAATATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997