Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LY388_RS16960 Genome accession   NZ_CP090387
Coordinates   2565519..2566037 (-) Length   172 a.a.
NCBI ID   WP_001130229.1    Uniprot ID   -
Organism   Vibrio cholerae strain GXFL1-4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2560519..2571037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS16935 (LY388_16935) rimM 2560628..2561182 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  LY388_RS16940 (LY388_16940) rpsP 2561210..2561458 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  LY388_RS16945 (LY388_16945) ffh 2561694..2563079 (-) 1386 WP_000462715.1 signal recognition particle protein -
  LY388_RS16950 (LY388_16950) - 2563292..2564086 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  LY388_RS16955 (LY388_16955) - 2564169..2565449 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  LY388_RS16960 (LY388_16960) luxS 2565519..2566037 (-) 519 WP_001130229.1 S-ribosylhomocysteine lyase Regulator
  LY388_RS16965 (LY388_16965) gshA 2566284..2567855 (-) 1572 WP_057563327.1 glutamate--cysteine ligase -
  LY388_RS16970 (LY388_16970) - 2567967..2570822 (-) 2856 WP_162811052.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19108.96 Da        Isoelectric Point: 5.2199

>NTDB_id=641936 LY388_RS16960 WP_001130229.1 2565519..2566037(-) (luxS) [Vibrio cholerae strain GXFL1-4]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKVIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=641936 LY388_RS16960 WP_001130229.1 2565519..2566037(-) (luxS) [Vibrio cholerae strain GXFL1-4]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTGGAAGAAGCCAAAGTGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994