Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LY388_RS13180 Genome accession   NZ_CP090387
Coordinates   1750083..1751507 (+) Length   474 a.a.
NCBI ID   WP_114725112.1    Uniprot ID   -
Organism   Vibrio cholerae strain GXFL1-4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1745083..1756507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS13160 (LY388_13160) - 1745353..1746138 (-) 786 WP_148524045.1 adenosylcobinamide-GDP ribazoletransferase -
  LY388_RS13165 (LY388_13165) cobT 1746138..1747163 (-) 1026 WP_162796479.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  LY388_RS13170 (LY388_13170) msrB 1747774..1748220 (-) 447 WP_000935882.1 peptide-methionine (R)-S-oxide reductase MsrB -
  LY388_RS13175 (LY388_13175) - 1748566..1749939 (+) 1374 WP_000117950.1 L-cystine transporter -
  LY388_RS13180 (LY388_13180) sbcB 1750083..1751507 (+) 1425 WP_114725112.1 exodeoxyribonuclease I Machinery gene
  LY388_RS13185 (LY388_13185) - 1751539..1751913 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  LY388_RS13190 (LY388_13190) - 1751904..1752578 (+) 675 WP_000266239.1 LrgB family protein -
  LY388_RS13195 (LY388_13195) cdd 1752748..1753635 (+) 888 WP_001245905.1 cytidine deaminase -
  LY388_RS13200 (LY388_13200) - 1753794..1754669 (+) 876 WP_199358303.1 AEC family transporter -
  LY388_RS13205 (LY388_13205) purT 1754823..1755998 (+) 1176 WP_185835585.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54560.89 Da        Isoelectric Point: 5.9823

>NTDB_id=641928 LY388_RS13180 WP_114725112.1 1750083..1751507(+) (sbcB) [Vibrio cholerae strain GXFL1-4]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQYLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=641928 LY388_RS13180 WP_114725112.1 1750083..1751507(+) (sbcB) [Vibrio cholerae strain GXFL1-4]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGGGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTAGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATTGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCAACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTATCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.945

100

0.989